[←][→] ath   AT1G54380 Gene
functional annotation
Function   spliceosome protein-like protein  
GO BP
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome  (11 genes)  IMP  
GO:0000387 [list] [network] spliceosomal snRNP assembly  (17 genes)  IBA IMP  
GO:0070417 [list] [network] cellular response to cold  (37 genes)  IMP  
GO CC
GO:0032797 [list] [network] SMN complex  (3 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
KEGG ath03013 [list] [network] RNA transport (171 genes)
Protein NP_564657.1 
BLAST NP_564657.1 
Orthologous [Ortholog page] AT2G42510 (ath)  LOC4350305 (osa)  LOC11446023 (mtr)  LOC100260062 (vvi)  LOC100285014 (zma)  LOC100790542 (gma)  LOC100809164 (gma)  LOC101253626 (sly)  LOC103866646 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_564657.1)
Subcellular
localization
TargetP
other 8  (predict for NP_564657.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with AT1G54380 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.8 YAO Transducin/WD40 repeat-like superfamily protein [detail] 825889
6.7 AT3G16840 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 820937
6.3 AT5G35910 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein [detail] 833577
Coexpressed
gene list		 [Coexpressed gene list for AT1G54380]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262964_at
262964_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262964_at
262964_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262964_at
262964_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841879      
Refseq ID (protein) NP_564657.1 


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