[←][→] ath   AT1G54490 Gene
functional annotation
Function   exoribonuclease 4  
GO BP
GO:0009961 [list] [network] response to 1-aminocyclopropane-1-carboxylic acid  (5 genes)  IMP  
GO:0010587 [list] [network] miRNA catabolic process  (6 genes)  IMP  
GO:0031087 [list] [network] deadenylation-independent decapping of nuclear-transcribed mRNA  (6 genes)  IMP  
GO:0061014 [list] [network] positive regulation of mRNA catabolic process  (6 genes)  IGI  
GO:0070370 [list] [network] cellular heat acclimation  (10 genes)  IEP IMP  
GO:0000291 [list] [network] nuclear-transcribed mRNA catabolic process, exonucleolytic  (24 genes)  IMP  
GO:0010286 [list] [network] heat acclimation  (53 genes)  IMP  
GO:0006402 [list] [network] mRNA catabolic process  (80 genes)  IMP  
GO:0009630 [list] [network] gravitropism  (90 genes)  IMP  
GO:0010087 [list] [network] phloem or xylem histogenesis  (102 genes)  IMP  
GO:0009873 [list] [network] ethylene-activated signaling pathway  (191 genes)  IGI IMP  
GO:0040029 [list] [network] regulation of gene expression, epigenetic  (210 genes)  IMP  
GO:0009826 [list] [network] unidimensional cell growth  (279 genes)  IMP  
GO:0009723 [list] [network] response to ethylene  (297 genes)  IMP  
GO:0051301 [list] [network] cell division  (352 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0005844 [list] [network] polysome  (10 genes)  IDA  
GO:0010494 [list] [network] cytoplasmic stress granule  (20 genes)  IDA  
GO:0000932 [list] [network] P-body  (56 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0004534 [list] [network] 5'-3' exoribonuclease activity  (5 genes)  IGI IMP  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04016 [list] [network] MAPK signaling pathway - plant (134 genes)
Protein NP_001321327.1  NP_175851.1 
BLAST NP_001321327.1  NP_175851.1 
Orthologous [Ortholog page] LOC4334408 (osa)  LOC11429796 (mtr)  XRN4 (sly)  LOC100253751 (vvi)  LOC100384297 (zma)  LOC100789497 (gma)  LOC100793385 (gma)  LOC100817715 (gma)  LOC103838732 (bra)  LOC112421269 (mtr) 
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1,  plas 1  (predict for NP_001321327.1)
cyto 9  (predict for NP_175851.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001321327.1)
other 7,  mito 4  (predict for NP_175851.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with XRN4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.9 UBP13 ubiquitin-specific protease 13 [detail] 820364
7.4 AT5G07940 dentin sialophosphoprotein-like protein [detail] 830688
7.2 AT1G02080 transcription regulator [detail] 839244
6.8 AT5G42220 Ubiquitin-like superfamily protein [detail] 834227
5.9 ZIGA4 ARF GAP-like zinc finger-containing protein ZIGA4 [detail] 837390
Coexpressed
gene list		 [Coexpressed gene list for XRN4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262961_at
262961_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262961_at
262961_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262961_at
262961_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841891      
Refseq ID (protein) NP_001321327.1 
NP_175851.1 


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