[←][→] ath   AT1G63020 Gene
functional annotation
Function   nuclear RNA polymerase D1A  
GO BP
GO:0010495 [list] [network] long-distance posttranscriptional gene silencing  (3 genes)  IMP  
GO:0030422 [list] [network] production of siRNA involved in RNA interference  (34 genes)  IGI IMP  
GO:0031047 [list] [network] gene silencing by RNA  (183 genes)  IMP  
GO CC
GO:0000418 [list] [network] RNA polymerase IV complex  (15 genes)  IDA IPI  
GO:0005666 [list] [network] RNA polymerase III complex  (23 genes)  IBA  
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0001056 [list] [network] RNA polymerase III activity  (24 genes)  IBA  
GO:0003899 [list] [network] DNA-directed 5'-3' RNA polymerase activity  (59 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001185298.1  NP_001320708.1  NP_001320709.1  NP_001320710.1  NP_176490.2 
BLAST NP_001185298.1  NP_001320708.1  NP_001320709.1  NP_001320710.1  NP_176490.2 
Orthologous [Ortholog page] LOC778259 (sly)  LOC4336722 (osa)  LOC4347810 (osa)  LOC11436803 (mtr)  LOC100254724 (vvi)  LOC100501057 (zma)  LOC100796185 (gma)  LOC100810483 (gma)  LOC103838307 (bra)  LOC103847833 (bra) 
Subcellular
localization
wolf
nucl 3,  chlo 3,  cysk_nucl 2,  cyto 1,  mito 1,  plas 1,  vacu 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_001185298.1)
nucl 3,  plas 2,  E.R. 2,  E.R._plas 2  (predict for NP_001320708.1)
nucl 3,  chlo 3,  cysk_nucl 2,  cyto 1,  mito 1,  plas 1,  vacu 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_001320709.1)
chlo 3,  nucl 2,  E.R. 2,  cysk_nucl 1,  mito 1,  plas 1,  vacu 1,  mito_plas 1  (predict for NP_001320710.1)
nucl 3,  chlo 3,  cysk_nucl 2,  cyto 1,  mito 1,  plas 1,  vacu 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_176490.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001185298.1)
other 8  (predict for NP_001320708.1)
other 8  (predict for NP_001320709.1)
other 8  (predict for NP_001320710.1)
other 8  (predict for NP_176490.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
Genes directly connected with NRPD1A on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.6 CHR38 chromatin remodeling 38 [detail] 823287
5.4 DCL3 dicer-like 3 [detail] 823508
4.4 RDR2 RNA-dependent RNA polymerase 2 [detail] 826714
Coexpressed
gene list		 [Coexpressed gene list for NRPD1A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261100_at
261100_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261100_at
261100_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261100_at
261100_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842605      
Refseq ID (protein) NP_001185298.1 
NP_001320708.1 
NP_001320709.1 
NP_001320710.1 
NP_176490.2 


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