[←][→] ath   AT1G64860 Gene
functional annotation
Function   sigma factor A  
GO BP
GO:0071461 [list] [network] cellular response to redox state  (2 genes)  IDA  
GO:0080005 [list] [network] photosystem stoichiometry adjustment  (3 genes)  IDA  
GO:0006352 [list] [network] DNA-templated transcription, initiation  (56 genes)  IDA TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (131 genes)  IEP  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IDA  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1988 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001319322.1  NP_176666.1 
BLAST NP_001319322.1  NP_176666.1 
Orthologous [Ortholog page] LOC541691 (zma)  LOC541692 (zma)  LOC4344738 (osa)  LOC7459204 (ppo)  LOC25480544 (mtr)  LOC100256191 (vvi)  LOC100794548 (gma)  LOC100801884 (gma)  LOC101252856 (sly)  LOC101263418 (sly)  LOC103853304 (bra) 
Subcellular
localization
wolf
cyto 5,  chlo 3,  mito 1  (predict for NP_001319322.1)
cyto 6,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_176666.1)
Subcellular
localization
TargetP
other 3  (predict for NP_001319322.1)
other 3  (predict for NP_176666.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin and chlorophyll metabolism 4
Genes directly connected with SIGA on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
12.7 HEMA1 Glutamyl-tRNA reductase family protein [detail] 842198
9.2 ATH13 ABC2 homolog 13 [detail] 836618
8.9 ABCI8 ATP binding cassette protein 1 [detail] 825814
7.2 PSY PHYTOENE SYNTHASE [detail] 831587
5.8 AT4G02920 hypothetical protein [detail] 828139
4.7 LOL1 lsd one like 1 [detail] 840148
Coexpressed
gene list		 [Coexpressed gene list for SIGA]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262879_at
262879_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262879_at
262879_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262879_at
262879_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842794      
Refseq ID (protein) NP_001319322.1 
NP_176666.1 


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