ATTED-II : GeneID search result

[←][→] ath AT1G65040 Gene

functional annotation

Function

RING/U-box superfamily protein

GO BP

GO:0030433 [list] [network] ubiquitin-dependent ERAD pathway	(36 genes)	IMP
GO:0016567 [list] [network] protein ubiquitination	(624 genes)	IEA

GO CC

GO:0005789 [list] [network] endoplasmic reticulum membrane	(466 genes)	IEA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	IDA
GO:0005739 [list] [network] mitochondrion	(4405 genes)	ISM
GO:0016021 [list] [network] integral component of membrane	(4803 genes)	IEA

GO MF

GO:0046872 [list] [network] metal ion binding

(3180 genes)

IEA

KEGG

ath04120 [list] [network] Ubiquitin mediated proteolysis (143 genes)

ath04141 [list] [network] Protein processing in endoplasmic reticulum (211 genes)

Protein

NP_001077774.1 NP_001322004.1 NP_001322005.1 NP_001322006.1 NP_176684.4 NP_849843.3

BLAST

NP_001077774.1 NP_001322004.1 NP_001322005.1 NP_001322006.1 NP_176684.4 NP_849843.3

Orthologous

[Ortholog page] Hrd1A (ath) LOC4340826 (osa) LOC11433721 (mtr) LOC11441665 (mtr) LOC100217233 (zma) LOC100252838 (vvi) LOC100384282 (zma) LOC100782356 (gma) LOC100816441 (gma) LOC101257051 (sly) LOC101262220 (sly) LOC103840247 (bra) LOC103852213 (bra)

Subcellular
localization
wolf

plas 4, vacu 3, chlo 1, E.R. 1	(predict for NP_001077774.1)
plas 6, vacu 3, nucl_plas 3, cysk_plas 3, mito_plas 3, cyto_plas 3	(predict for NP_001322004.1)
chlo 4, E.R. 4, mito 1	(predict for NP_001322005.1)
chlo 4, nucl 1, mito 1, cyto 1, extr 1, vacu 1, E.R. 1, cyto_mito 1, cysk_nucl 1, nucl_plas 1, E.R._vacu 1, mito_plas 1, cyto_E.R. 1	(predict for NP_001322006.1)
chlo 3, extr 2, cyto 1, E.R. 1, cyto_E.R. 1	(predict for NP_176684.4)
plas 6, vacu 2, chlo 1, E.R. 1, golg 1	(predict for NP_849843.3)

Subcellular
localization
TargetP

scret 5	(predict for NP_001077774.1)
scret 9	(predict for NP_001322004.1)
other 9, mito 4	(predict for NP_001322005.1)
other 7, mito 4	(predict for NP_001322006.1)
scret 8, other 6	(predict for NP_176684.4)
scret 9	(predict for NP_849843.3)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	8
ath00510	N-Glycan biosynthesis	2
ath04145	Phagosome	2

Genes directly connected with Hrd1B on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
10.3	UTR3	UDP-galactose transporter 3	[detail]	837998
10.2	UTR1	UDP-galactose transporter 1	[detail]	814811
9.0	PDIL2-2	PDI-like 2-2	[detail]	839355

Coexpressed
gene list

[Coexpressed gene list for Hrd1B]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261904_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261904_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261904_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	842812
Refseq ID (protein)	NP_001077774.1
	NP_001322004.1
	NP_001322005.1
	NP_001322006.1
	NP_176684.4
	NP_849843.3

The preparation time of this page was 0.2 [sec].