[←][→] ath   AT1G76300 Gene
functional annotation
Function   snRNP core protein SMD3  
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (17 genes)  IBA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IMP  
GO CC
GO:0034715 [list] [network] pICln-Sm protein complex  (4 genes)  IBA  
GO:0034719 [list] [network] SMN-Sm protein complex  (4 genes)  IBA  
GO:0000243 [list] [network] commitment complex  (7 genes)  IBA  
GO:0005687 [list] [network] U4 snRNP  (9 genes)  IBA  
GO:0005682 [list] [network] U5 snRNP  (15 genes)  IBA  
GO:0005685 [list] [network] U1 snRNP  (17 genes)  IBA  
GO:0005689 [list] [network] U12-type spliceosomal complex  (18 genes)  IBA  
GO:0005686 [list] [network] U2 snRNP  (32 genes)  IBA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (48 genes)  IBA  
GO:0016604 [list] [network] nuclear body  (115 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_177757.1 
BLAST NP_177757.1 
Orthologous [Ortholog page] AT1G20580 (ath)  LOC4327991 (osa)  LOC4332206 (osa)  LOC7474576 (ppo)  LOC7494696 (ppo)  LOC11426884 (mtr)  LOC100250427 (vvi)  LOC100254787 (vvi)  LOC100284316 (zma)  LOC100285722 (zma)  LOC100305856 (gma)  LOC100790315 (gma)  LOC101247792 (sly)  LOC101250657 (sly)  LOC101256541 (sly)  LOC103633373 (zma)  LOC103832082 (bra)  LOC103836270 (bra)  LOC103872847 (bra)  LOC109124003 (vvi) 
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1  (predict for NP_177757.1)
Subcellular
localization
TargetP
other 8  (predict for NP_177757.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03040 Spliceosome 2
Genes directly connected with SmD3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.3 GR-RBP3 glycine-rich RNA-binding protein 3 [detail] 836224
7.2 AT5G16060 Cytochrome c oxidase biogenesis protein Cmc1-like protein [detail] 831463
7.1 AT3G18760 Translation elongation factor EF1B/ribosomal protein S6 family protein [detail] 821407
Coexpressed
gene list		 [Coexpressed gene list for SmD3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261725_at
261725_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261725_at
261725_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261725_at
261725_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 843963      
Refseq ID (protein) NP_177757.1 


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