[←][→] ath   AT1G02790 Gene
functional annotation
Function   polygalacturonase 4  
GO BP
GO:0071555 [list] [network] cell wall organization  (538 genes)  IEA  
GO:0005975 [list] [network] carbohydrate metabolic process  (995 genes)  IEA  
GO CC
GO:0005618 [list] [network] cell wall  (685 genes)  IEA  
GO:0005576 [list] [network] extracellular region  (3363 genes)  IEA ISM  
GO MF
GO:0047911 [list] [network] galacturan 1,4-alpha-galacturonidase activity  (2 genes)  IEA  
GO:0004650 [list] [network] polygalacturonase activity  (52 genes)  ISS  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (96 genes)
Protein NP_171778.1 
BLAST NP_171778.1 
Orthologous [Ortholog page] LOC7475901 (ppo)  LOC7487798 (ppo)  LOC7496680 (ppo)  LOC11422040 (mtr)  LOC25488062 (mtr)  LOC25494084 (mtr)  LOC100253785 (vvi)  LOC100265436 (vvi)  LOC100782722 (gma)  LOC100800324 (gma)  LOC100802357 (gma)  LOC101260647 (sly)  LOC101263150 (sly)  LOC101266692 (sly)  LOC103835322 (bra)  LOC103835323 (bra)  LOC103836643 (bra)  LOC103843737 (bra)  LOC103844563 (bra)  LOC106796220 (gma) 
Subcellular
localization
wolf
extr 5,  chlo 2,  vacu 1,  chlo_mito 1,  E.R._vacu 1  (predict for NP_171778.1)
Subcellular
localization
TargetP
scret 7  (predict for NP_171778.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 3
Genes directly connected with PGA4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
21.3 VGD1 Plant invertase/pectin methylesterase inhibitor superfamily [detail] 819318
20.3 AT3G07820 Pectin lyase-like superfamily protein [detail] 819973
20.1 RALFL8 ralf-like 8 [detail] 842451
15.1 AT5G07430 Pectin lyase-like superfamily protein [detail] 830634
13.5 AT5G45880 Pollen Ole e 1 allergen and extensin family protein [detail] 834628
11.2 AT3G28830 mucin-like protein, putative (DUF1216) [detail] 822515
10.3 AT3G28750 hypothetical protein [detail] 822507
9.7 AT5G50030 Plant invertase/pectin methylesterase inhibitor superfamily protein [detail] 835067
9.6 sks13 SKU5 similar 13 [detail] 820540
9.6 BCP1 homolog of Brassica campestris pollen protein 1 [detail] 839067
5.4 AT2G27180 hypothetical protein [detail] 817260
Coexpressed
gene list		 [Coexpressed gene list for PGA4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262122_at
262122_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262122_at
262122_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262122_at
262122_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839391      
Refseq ID (protein) NP_171778.1 


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