[←][→] ath   At1g02790 Gene
functional annotation
Function   polygalacturonase 4      
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (844 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO MF
GO:0047911 [list] [network] galacturan 1,4-alpha-galacturonidase activity  (2 genes)  IEA  
GO:0004650 [list] [network] polygalacturonase activity  (68 genes)  ISS  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
Protein NP_171778.1 
BLAST NP_171778.1 
Orthologous [Ortholog page] LOC7475901 (ppo)  LOC7477227 (ppo)  LOC7478851 (ppo)  LOC7487798 (ppo)  LOC7496680 (ppo)  LOC11422040 (mtr)  LOC25488062 (mtr)  LOC25494084 (mtr)  LOC100782722 (gma)  LOC100800324 (gma)  LOC100802357 (gma)  LOC101260647 (sly)  LOC101263150 (sly)  LOC103835322 (bra)  LOC103835323 (bra)  LOC103836643 (bra)  LOC103843737 (bra)  LOC103844563 (bra)  LOC106796220 (gma) 
Subcellular
localization
wolf
extr 5,  chlo 2,  vacu 1,  chlo_mito 1,  E.R._vacu 1  (predict for NP_171778.1)
Subcellular
localization
TargetP
scret 7  (predict for NP_171778.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 5
ath00053 Ascorbate and aldarate metabolism 4
Genes directly connected with PGA4 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
19.9 AT5G39880 uncharacterized protein [detail] 833985
19.7 AT3G07820 Pectin lyase-like superfamily protein [detail] 819973
18.7 VGD1 Plant invertase/pectin methylesterase inhibitor superfamily [detail] 819318
16.3 VGDH2 VANGUARD-like protein [detail] 825390
16.1 AT3G01270 Pectate lyase family protein [detail] 821142
15.9 VGDH1 Plant invertase/pectin methylesterase inhibitor superfamily [detail] 819317
15.2 sks14 SKU5 similar 14 [detail] 842005
15.0 sks11 SKU5 similar 11 [detail] 820539
14.7 AT5G45880 Pollen Ole e 1 allergen and extensin family protein [detail] 834628
14.4 sks12 SKU5 similar 12 [detail] 842006
13.9 AT5G61720 hypothetical protein (DUF1216) [detail] 836294
13.8 AT5G07430 Pectin lyase-like superfamily protein [detail] 830634
13.6 AT3G07850 Pectin lyase-like superfamily protein [detail] 819976
11.1 AT3G28750 uncharacterized protein [detail] 822507
10.9 AT3G28830 mucin-like protein, putative (DUF1216) [detail] 822515
10.7 AT3G28980 mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [detail] 822538
10.1 sks13 SKU5 similar 13 [detail] 820540
8.4 AGP23 arabinogalactan protein 23 [detail] 824938
5.4 AT3G49540 uncharacterized protein [detail] 824116
Coexpressed
gene list		 [Coexpressed gene list for PGA4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262122_at
262122_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262122_at
262122_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262122_at
262122_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839391      
Refseq ID (protein) NP_171778.1 


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