[←][→] ath   At1g03475 Gene
functional annotation
Function   Coproporphyrinogen III oxidase    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0033014 [list] [network] tetrapyrrole biosynthetic process  (85 genes)  IC  
GO CC
GO:0048046 [list] [network] apoplast  (305 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3154 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5425 genes)  IDA  
GO MF
GO:0004109 [list] [network] coproporphyrinogen oxidase activity  (1 genes)  IGI  
GO:0042803 [list] [network] protein homodimerization activity  (227 genes)  ISS  
KEGG ath00860 [list] [network] Porphyrin metabolism (53 genes)
ath01240 [list] [network] Biosynthesis of cofactors (236 genes)
Protein NP_171847.4 
BLAST NP_171847.4 
Orthologous [Ortholog page] LOC4336951 (osa)  LOC7485528 (ppo)  LOC11425298 (mtr)  CPX (gma)  LOC101260673 (sly)  LOC103843696 (bra)  LOC103844502 (bra)  LOC123046485 (tae)  LOC123054338 (tae)  LOC123127622 (tae)  LOC123137386 (tae)  LOC123144728 (tae)  LOC123190221 (tae)  LOC123403778 (hvu)  LOC123427648 (hvu) 
Subcellular
localization
wolf
chlo 9,  mito 1,  pero 1  (predict for NP_171847.4)
Subcellular
localization
TargetP
chlo 9  (predict for NP_171847.4)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 10
ath01240 Biosynthesis of cofactors 9
ath03010 Ribosome 2
Genes directly connected with LIN2 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.3 HEMC hydroxymethylbilane synthase [detail] 830724
9.2 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 [detail] 824034
9.0 HEMB1 Aldolase superfamily protein [detail] 843310
6.4 DHS2 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase [detail] 829489
Coexpressed
gene list		 [Coexpressed gene list for LIN2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264820_at
264820_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264820_at
264820_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264820_at
264820_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839489      
Refseq ID (protein) NP_171847.4 


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