[←][→] ath   AT1G04680 Gene
functional annotation
Function   Pectin lyase-like superfamily protein  
GO BP
GO:0045490 [list] [network] pectin catabolic process  (96 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (24 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (412 genes)  ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (96 genes)
Protein NP_563715.1 
BLAST NP_563715.1 
Orthologous [Ortholog page] LOC103843635 (bra)  LOC103844229 (bra) 
Subcellular
localization
wolf
extr 4,  E.R. 2,  golg 1,  cyto_E.R. 1  (predict for NP_563715.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_563715.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 3
ath00500 Starch and sucrose metabolism 2
Genes directly connected with AT1G04680 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.2 AT1G67750 Pectate lyase family protein [detail] 843100
7.1 GH9C2 glycosyl hydrolase 9C2 [detail] 842747
6.9 BGAL3 beta-galactosidase 3 [detail] 829788
Coexpressed
gene list		 [Coexpressed gene list for AT1G04680]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264611_at
264611_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264611_at
264611_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264611_at
264611_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839452      
Refseq ID (protein) NP_563715.1 


The preparation time of this page was 0.2 [sec].