[←][→] ath   At1g05460 Gene
functional annotation
Function   P-loop containing nucleoside triphosphate hydrolases superfamily protein      
GO BP
GO:0009616 [list] [network] RNAi-mediated antiviral immune response  (12 genes)  IMP  
GO:0035194 [list] [network] RNA-mediated post-transcriptional gene silencing  (92 genes)  IMP  
GO CC
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (45 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001320371.1  NP_172037.1 
BLAST NP_001320371.1  NP_172037.1 
Orthologous [Ortholog page] LOC4331698 (osa)  LOC11416205 (mtr)  LOC11441457 (mtr)  LOC18098912 (ppo)  LOC18101568 (ppo)  LOC100801796 (gma)  LOC101251686 (sly)  LOC101258662 (sly)  LOC103844125 (bra)  LOC112325889 (ppo)  LOC123084864 (tae)  LOC123093229 (tae)  LOC123098491 (tae)  LOC123449501 (hvu) 
Subcellular
localization
wolf
chlo 3,  plas 2,  nucl 1,  cyto_plas 1,  cyto 1,  chlo_mito 1,  cysk_nucl 1,  E.R._plas 1  (predict for NP_001320371.1)
chlo 3,  plas 2,  nucl 1,  cyto_plas 1,  cyto 1,  vacu 1,  chlo_mito 1,  cysk_nucl 1  (predict for NP_172037.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001320371.1)
other 8  (predict for NP_172037.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
Genes directly connected with SDE3 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.0 KTF1 kow domain-containing transcription factor 1 [detail] 830308
9.0 NRPD2A nuclear RNA polymerase D2A [detail] 821960
8.9 AT2G13690 PRLI-interacting factor [detail] 815853
6.5 SGS3 XS domain-containing protein / XS zinc finger domain-containing protein-like protein [detail] 832422
5.3 RBL Transducin/WD40 repeat-like superfamily protein [detail] 821658
4.5 AT3G09190 Concanavalin A-like lectin family protein [detail] 3768781
4.0 AT5G11460 hypothetical protein (DUF581) [detail] 831017
Coexpressed
gene list		 [Coexpressed gene list for SDE3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261381_at
261381_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261381_at
261381_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261381_at
261381_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837047      
Refseq ID (protein) NP_001320371.1 
NP_172037.1 


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