[←][→] ath   At1g06680 Gene
functional annotation
Function   photosystem II subunit P-1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0019684 [list] [network] photosynthesis, light reaction  (112 genes)  TAS  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (19 genes)  IEA  
GO:0019898 [list] [network] extrinsic component of membrane  (46 genes)  TAS  
GO:0009543 [list] [network] chloroplast thylakoid lumen  (50 genes)  HDA  
GO:0031977 [list] [network] thylakoid lumen  (67 genes)  HDA  
GO:0048046 [list] [network] apoplast  (305 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA IDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3154 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0008266 [list] [network] poly(U) RNA binding  (19 genes)  IDA  
GO:1901149 [list] [network] salicylic acid binding  (28 genes)  HDA  
GO:0005509 [list] [network] calcium ion binding  (132 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
KEGG ath00195 [list] [network] Photosynthesis (77 genes)
Protein NP_001117239.1  NP_172153.1 
BLAST NP_001117239.1  NP_172153.1 
Orthologous [Ortholog page] LOC543290 (tae)  PSBP (sly)  LOC4342370 (osa)  LOC7464819 (ppo)  LOC7480710 (ppo)  LOC11429945 (mtr)  LOC25490561 (mtr)  LOC100781848 (gma)  LOC100784806 (gma)  LOC100802315 (gma)  LOC100813388 (gma)  LOC103836470 (bra)  LOC103843499 (bra)  LOC103844017 (bra)  LOC103867933 (bra)  LOC123044987 (tae)  LOC123052884 (tae)  LOC123426291 (hvu) 
Subcellular
localization
wolf
chlo 4,  extr 2,  mito 1,  cyto 1,  vacu 1,  E.R. 1,  cyto_mito 1,  E.R._vacu 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_001117239.1)
chlo 7,  mito 3  (predict for NP_172153.1)
Subcellular
localization
TargetP
scret 6,  chlo 3  (predict for NP_001117239.1)
chlo 8  (predict for NP_172153.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 11
ath00196 Photosynthesis - antenna proteins 6
Genes directly connected with PSBP-1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
22.1 PSBO1 PS II oxygen-evolving complex 1 [detail] 836789
20.3 LHCB5 light harvesting complex of photosystem II 5 [detail] 826626
19.6 LHCA3 PSI type III chlorophyll a/b-binding protein [detail] 842446
19.5 PSAF photosystem I subunit F [detail] 840021
17.9 PSAD-1 photosystem I subunit D-1 [detail] 828183
17.9 DRT112 Cupredoxin superfamily protein [detail] 838622
17.2 LHCB4.1 light harvesting complex photosystem II [detail] 830325
16.7 PSBX photosystem II subunit X [detail] 815210
15.4 PSAN photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) [detail] 836525
14.3 PSBY photosystem II BY [detail] 843099
13.1 TLP18.3 thylakoid lumen 18.3 kDa protein [detail] 841919
12.9 PSI-P photosystem I P subunit [detail] 819295
10.9 APE2 Glucose-6-phosphate/phosphate translocator-like protein [detail] 834652
9.6 PSB27 photosystem II family protein [detail] 839449
Coexpressed
gene list		 [Coexpressed gene list for PSBP-1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262632_at
262632_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262632_at
262632_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262632_at
262632_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837178      
Refseq ID (protein) NP_001117239.1 
NP_172153.1 


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