[←][→] ath   AT1G08620 Gene
functional annotation
Function   Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein  
GO BP
GO:0006338 [list] [network] chromatin remodeling  (51 genes)  IBA  
GO:0055114 [list] [network] oxidation-reduction process  (1468 genes)  IEA  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  TAS  
GO CC
GO:0035097 [list] [network] histone methyltransferase complex  (18 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0034647 [list] [network] histone demethylase activity (H3-trimethyl-K4 specific)  (8 genes)  IBA  
GO:0032452 [list] [network] histone demethylase activity  (14 genes)  IBA  
GO:0051213 [list] [network] dioxygenase activity  (147 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_001184940.1  NP_001318955.1  NP_001320435.1  NP_172338.5 
BLAST NP_001184940.1  NP_001318955.1  NP_001320435.1  NP_172338.5 
Orthologous [Ortholog page] LOC4338043 (osa)  LOC7479746 (ppo)  LOC25484581 (mtr)  LOC25499272 (mtr)  LOC100243365 (vvi)  LOC100249688 (vvi)  LOC100383891 (zma)  LOC100800271 (gma)  LOC100804864 (gma)  LOC100809262 (gma)  LOC101244589 (sly)  LOC101246913 (sly)  LOC103654141 (zma)  LOC103836382 (bra)  LOC103871604 (bra)  LOC109946065 (zma) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001184940.1)
nucl 9  (predict for NP_001318955.1)
nucl 9  (predict for NP_001320435.1)
nucl 10  (predict for NP_172338.5)
Subcellular
localization
TargetP
other 8  (predict for NP_001184940.1)
other 8  (predict for NP_001318955.1)
other 8  (predict for NP_001320435.1)
other 7  (predict for NP_172338.5)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
Genes directly connected with PKDM7D on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.8 SUO protein SUO [detail] 823960
8.8 AT4G30100 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 829133
8.5 AT3G48060 BAH and TFIIS domain-containing protein [detail] 823961
Coexpressed
gene list		 [Coexpressed gene list for PKDM7D]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264792_at
264792_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264792_at
264792_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264792_at
264792_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837384      
Refseq ID (protein) NP_001184940.1 
NP_001318955.1 
NP_001320435.1 
NP_172338.5 


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