ATTED-II : GeneID search result

[←][→] ath AT1G08880 Gene

functional annotation

Function

Histone superfamily protein

GO BP

GO:0006325 [list] [network] chromatin organization

(338 genes)

IBA

GO CC

GO:0000786 [list] [network] nucleosome	(45 genes)	IEA
GO:0000790 [list] [network] nuclear chromatin	(80 genes)	IBA
GO:0005576 [list] [network] extracellular region	(3363 genes)	HDA
GO:0005634 [list] [network] nucleus	(10793 genes)	IDA ISM

GO MF

GO:0046982 [list] [network] protein heterodimerization activity	(122 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2280 genes)	IBA

KEGG

Protein

NP_172363.1

BLAST

NP_172363.1

Orthologous

[Ortholog page] GAMMA-H2AX (ath) LOC4333939 (osa) LOC4352398 (osa) LOC7473316 (ppo) LOC11423173 (mtr) LOC11430690 (mtr) LOC11434641 (mtr) LOC11443483 (mtr) LOC100254490 (vvi) LOC100257319 (vvi) LOC100259607 (vvi) LOC100305465 (gma) LOC100787899 (gma) LOC100818215 (gma) LOC101248985 (sly) LOC101255365 (sly) LOC101256806 (sly) LOC101264975 (sly) LOC103625929 (zma) LOC103640970 (zma) LOC103643930 (zma) LOC103836372 (bra) LOC103871626 (bra)

Subcellular
localization
wolf

nucl 9, chlo 1

(predict for NP_172363.1)

Subcellular
localization
TargetP

chlo 7

(predict for NP_172363.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with H2AXA on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
11.9	HTA2	histone H2A 2	[detail]	828831
10.4	AT1G09200	Histone superfamily protein	[detail]	837440
10.1	HTB9	Histone superfamily protein	[detail]	823741
9.7	GAMMA-H2AX	gamma histone	[detail]	841910

Coexpressed
gene list

[Coexpressed gene list for H2AXA]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

264651_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

264651_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

264651_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	837409
Refseq ID (protein)	NP_172363.1

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