[←][→] ath   AT1G09340 Gene
functional annotation
Function   chloroplast RNA binding protein  
GO BP
GO:0033499 [list] [network] galactose catabolic process via UDP-galactose  (14 genes)  IBA  
GO:0019388 [list] [network] galactose catabolic process  (16 genes)  IBA  
GO:0032544 [list] [network] plastid translation  (16 genes)  IMP  
GO:0045727 [list] [network] positive regulation of translation  (26 genes)  IMP  
GO:0042631 [list] [network] cellular response to water deprivation  (35 genes)  IEP  
GO:0007623 [list] [network] circadian rhythm  (111 genes)  IEP IMP  
GO:0005996 [list] [network] monosaccharide metabolic process  (150 genes)  IMP  
GO:0000272 [list] [network] polysaccharide catabolic process  (170 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (194 genes)  IMP  
GO:0009611 [list] [network] response to wounding  (212 genes)  IEP  
GO:0006364 [list] [network] rRNA processing  (276 genes)  IGI  
GO:0042742 [list] [network] defense response to bacterium  (399 genes)  IEP  
GO:0009409 [list] [network] response to cold  (411 genes)  IEP  
GO:0045893 [list] [network] positive regulation of transcription, DNA-templated  (495 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2484 genes)  IMP  
GO CC
GO:0000427 [list] [network] plastid-encoded plastid RNA polymerase complex  (5 genes)  IMP  
GO:0010319 [list] [network] stromule  (33 genes)  IDA  
GO:0010287 [list] [network] plastoglobule  (68 genes)  IDA  
GO:0005777 [list] [network] peroxisome  (325 genes)  IDA  
GO:0048046 [list] [network] apoplast  (443 genes)  IDA  
GO:0005840 [list] [network] ribosome  (463 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  ISM  
GO:0005576 [list] [network] extracellular region  (3363 genes)  HDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IBA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA  
GO MF
GO:0010297 [list] [network] heteropolysaccharide binding  (3 genes)  IDA  
GO:0003978 [list] [network] UDP-glucose 4-epimerase activity  (11 genes)  IBA  
GO:0019843 [list] [network] rRNA binding  (99 genes)  IEA  
GO:0050662 [list] [network] coenzyme binding  (416 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001322308.1  NP_172405.1 
BLAST NP_001322308.1  NP_172405.1 
Orthologous [Ortholog page] LOC4352083 (osa)  LOC7478886 (ppo)  LOC25499634 (mtr)  LOC100193292 (zma)  LOC100261308 (vvi)  LOC100791076 (gma)  LOC100799721 (gma)  LOC101253094 (sly)  LOC103871660 (bra) 
Subcellular
localization
wolf
nucl 3,  cyto 3,  cyto_nucl 3,  chlo 2,  cyto_pero 2  (predict for NP_001322308.1)
chlo 7,  nucl 1,  vacu 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_172405.1)
Subcellular
localization
TargetP
other 7,  scret 3  (predict for NP_001322308.1)
other 3  (predict for NP_172405.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 8
ath00630 Glyoxylate and dicarboxylate metabolism 7
ath00910 Nitrogen metabolism 4
ath00710 Carbon fixation in photosynthetic organisms 4
ath00260 Glycine, serine and threonine metabolism 3
Genes directly connected with CRB on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
16.0 SBPASE sedoheptulose-bisphosphatase [detail] 824746
13.1 SHM1 serine transhydroxymethyltransferase 1 [detail] 829949
12.9 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit [detail] 840895
12.0 ZKT protein containing PDZ domain, a K-box domain, and a TPR region [detail] 841995
11.7 PMDH2 peroxisomal NAD-malate dehydrogenase 2 [detail] 830825
11.2 CA1 carbonic anhydrase 1 [detail] 821134
11.1 LrgB membrane protein [detail] 840100
10.5 AT3G48420 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [detail] 824000
9.8 GLU1 glutamate synthase 1 [detail] 830292
9.1 GS2 glutamine synthetase 2 [detail] 833535
8.7 HCF101 ATP binding protein [detail] 822033
8.2 KEA1 K+ efflux antiporter 1 [detail] 837332
8.0 AT1G16080 nuclear protein [detail] 838178
7.9 GLDP1 glycine decarboxylase P-protein 1 [detail] 829438
7.2 AT1G71500 Rieske (2Fe-2S) domain-containing protein [detail] 843491
5.6 LHCB4.3 light harvesting complex photosystem II [detail] 818599
Coexpressed
gene list		 [Coexpressed gene list for CRB]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263676_at
263676_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263676_at
263676_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
263676_at
263676_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837455      
Refseq ID (protein) NP_001322308.1 
NP_172405.1 


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