ATTED-II : GeneID search result

[←][→] ath AT1G09660 Gene

functional annotation

Function

RNA-binding KH domain-containing protein

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IBA ISM

GO MF

GO:0003723 [list] [network] RNA binding

(1790 genes)

IBA

KEGG

Protein

NP_001320903.1 NP_172437.2 NP_973800.1

BLAST

NP_001320903.1 NP_172437.2 NP_973800.1

Orthologous

[Ortholog page] AT2G38610 (ath) AT3G08620 (ath) LOC4324889 (osa) LOC4334557 (osa) LOC4338818 (osa) LOC4342758 (osa) LOC7498113 (ppo) LOC11425798 (mtr) LOC11430327 (mtr) LOC11436419 (mtr) LOC11437020 (mtr) LOC25500011 (mtr) LOC25500014 (mtr) LOC100191210 (zma) LOC100245080 (vvi) LOC100247182 (vvi) LOC100263936 (vvi) LOC100272497 (zma) LOC100274205 (zma) LOC100282540 (zma) LOC100283658 (zma) LOC100382071 (zma) LOC100781151 (gma) LOC100791899 (gma) LOC100796731 (gma) LOC100797384 (gma) LOC100816420 (gma) LOC101259991 (sly) LOC101264337 (sly) LOC101264467 (sly) LOC101268791 (sly) LOC103836319 (bra) LOC103857794 (bra) LOC103867089 (bra) LOC103870608 (bra) LOC103871739 (bra)

Subcellular
localization
wolf

nucl 4, cyto 3, extr 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001320903.1)
nucl 4, cyto 3, extr 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_172437.2)
nucl 4, cyto 3, extr 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_973800.1)

Subcellular
localization
TargetP

other 6, chlo 3	(predict for NP_001320903.1)
other 6, chlo 3	(predict for NP_172437.2)
other 6, chlo 3	(predict for NP_973800.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	RNA transport	3
ath03020	RNA polymerase	2

Genes directly connected with AT1G09660 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.6	AT5G09380	RNA polymerase III RPC4	[detail]	830797
4.9	ABCG3	ABC-2 type transporter family protein	[detail]	817351
4.8	AT1G06560	NOL1/NOP2/sun family protein	[detail]	837167

Coexpressed
gene list

[Coexpressed gene list for AT1G09660]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

264665_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

264665_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

264665_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	837494
Refseq ID (protein)	NP_001320903.1
	NP_172437.2
	NP_973800.1

The preparation time of this page was 0.2 [sec].