[←][→] ath   At1g09800 Gene
functional annotation
Function   Pseudouridine synthase family protein      
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (9 genes)  IEA  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (697 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IEA ISM  
GO MF
GO:0106029 [list] [network] tRNA pseudouridine synthase activity  (2 genes)  IEA  
GO:0009982 [list] [network] pseudouridine synthase activity  (19 genes)  TAS  
GO:0003723 [list] [network] RNA binding  (1729 genes)  IEA  
KEGG
Protein NP_001322359.1  NP_172451.2 
BLAST NP_001322359.1  NP_172451.2 
Orthologous [Ortholog page] LOC4351716 (osa)  LOC11429209 (mtr)  LOC18111171 (ppo)  LOC100799818 (gma)  LOC100802586 (gma)  LOC101268033 (sly)  LOC103871756 (bra)  LOC123102869 (tae)  LOC123111073 (tae)  LOC123120024 (tae)  LOC123394910 (hvu) 
Subcellular
localization
wolf
nucl 8,  chlo 1,  cyto 1,  cysk 1  (predict for NP_001322359.1)
nucl 8,  chlo 1,  cyto 1,  cysk 1  (predict for NP_172451.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001322359.1)
other 9  (predict for NP_172451.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
Genes directly connected with AT1G09800 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.0 AT5G51540 Zincin-like metalloproteases family protein [detail] 835228
5.8 AT3G57350 Nucleoporin interacting component (Nup93/Nic96-like) family protein [detail] 824902
5.6 AT1G54310 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 841872
Coexpressed
gene list		 [Coexpressed gene list for AT1G09800]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264711_at
264711_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264711_at
264711_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264711_at
264711_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 837510      
Refseq ID (protein) NP_001322359.1 
NP_172451.2 


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