[][] ath   At1g13220 Gene
functional annotation
Function   nuclear matrix constituent protein-like protein Plant GARDENPlant GARDEN JBrowse
GO BP
GO:0097298 [list] [network] regulation of nucleus size  (4 genes)  IMP  
GO:0006997 [list] [network] nucleus organization  (50 genes)  IEA IGI IMP  
GO:0006974 [list] [network] cellular response to DNA damage stimulus  (234 genes)  IGI  
GO CC
GO:0034399 [list] [network] nuclear periphery  (11 genes)  IDA  
GO:0005654 [list] [network] nucleoplasm  (253 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
KEGG
Protein NP_001322783.1  NP_563923.1  NP_563924.1 
BLAST NP_001322783.1  NP_563923.1  NP_563924.1 
Orthologous [Ortholog page] LINC1 (ath)LINC3 (ath)LOC4330487 (osa)LOC7485949 (ppo)LOC18107408 (ppo)LOC25495346 (mtr)LOC25497658 (mtr)LOC100802673 (gma)LOC100803601 (gma)LOC100805888 (gma)LOC100816589 (gma)LOC101255471 (sly)LOC101264275 (sly)LOC103831155 (bra)LOC103852383 (bra)LOC103852523 (bra)LOC103871951 (bra)LOC113001403 (gma)LOC123128155 (tae)LOC123137957 (tae)LOC123145256 (tae)LOC123401394 (hvu)
Subcellular
localization
wolf
nucl 6,  chlo 4  (predict for NP_001322783.1)
chlo 6,  nucl 1,  extr 1,  vacu 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_563923.1)
nucl 7,  cyto 3  (predict for NP_563924.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_001322783.1)
mito 5  (predict for NP_563923.1)
other 6  (predict for NP_563924.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with LINC2 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
11.2 AT1G15940 Tudor/PWWP/MBT superfamily protein [detail] 838164
9.1 LINC3 little nuclei3 [detail] 843210
8.5 AT2G33435 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 817909
6.5 AT3G02890 RING/FYVE/PHD zinc finger superfamily protein [detail] 821192
6.1 VIIIB P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 828845
Coexpressed
gene list
[Coexpressed gene list for LINC2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262773_at
262773_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262773_at
262773_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
262773_at
262773_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 837882    
Refseq ID (protein) NP_001322783.1 
NP_563923.1 
NP_563924.1 


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