[←][→] ath   AT1G15820 Gene
functional annotation
Function   light harvesting complex photosystem II subunit 6  
GO BP
GO:0010196 [list] [network] nonphotochemical quenching  (11 genes)  IMP  
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (21 genes)  IBA  
GO:0018298 [list] [network] protein-chromophore linkage  (38 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (206 genes)  IMP NAS  
GO:0009416 [list] [network] response to light stimulus  (700 genes)  IBA  
GO CC
GO:0009783 [list] [network] photosystem II antenna complex  (2 genes)  NAS  
GO:0009522 [list] [network] photosystem I  (35 genes)  IEA  
GO:0010287 [list] [network] plastoglobule  (68 genes)  IBA IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (373 genes)  IBA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (474 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (543 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IBA IDA  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  HDA  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (27 genes)  IEA ISS  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_173034.1 
BLAST NP_173034.1 
Orthologous [Ortholog page] LOC542321 (zma)  LOC4336028 (osa)  LOC7473011 (ppo)  LOC7480776 (ppo)  LOC11430346 (mtr)  LOC100241887 (vvi)  LOC100273752 (zma)  LOC100527463 (gma)  LOC100783223 (gma)  LHCP (sly)  CAB-10A (sly)  LOC103836017 (bra)  LOC103842881 (bra)  LOC103872378 (bra)  LOC113561367 (zma) 
Subcellular
localization
wolf
chlo 9,  cyto 1  (predict for NP_173034.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_173034.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 13
ath00195 Photosynthesis 6
Genes directly connected with LHCB6 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
19.2 LHCB3 light-harvesting chlorophyll B-binding protein 3 [detail] 835515
18.2 LHCA1 chlorophyll a-b binding protein 6 [detail] 824654
16.7 PSAL photosystem I subunit l [detail] 826892
15.1 PSAH2 photosystem I subunit H2 [detail] 841653
14.8 CAB3 chlorophyll A/B binding protein 3 [detail] 839869
14.4 LHCB4.2 light harvesting complex photosystem II [detail] 820043
13.3 AT1G21500 hypothetical protein [detail] 838749
Coexpressed
gene list		 [Coexpressed gene list for LHCB6]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259491_at
259491_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259491_at
259491_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259491_at
259491_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838151      
Refseq ID (protein) NP_173034.1 


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