ATTED-II : GeneID search result

[←][→] ath At1g20410 Gene

functional annotation

Function

Pseudouridine synthase family protein

GO BP

GO:0001522 [list] [network] pseudouridine synthesis

(9 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast	(5004 genes)	IDA
GO:0005634 [list] [network] nucleus	(10305 genes)	ISM

GO MF

GO:0106029 [list] [network] tRNA pseudouridine synthase activity	(2 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1729 genes)	IEA

KEGG

Protein

NP_001322439.1 NP_173466.2

BLAST

NP_001322439.1 NP_173466.2

Orthologous

[Ortholog page] LOC4336659 (osa) LOC7485629 (ppo) LOC25482221 (mtr) LOC100780683 (gma) LOC101251773 (sly) LOC103829430 (bra) LOC103872835 (bra) LOC123046326 (tae) LOC123054181 (tae) LOC123190071 (tae) LOC123427514 (hvu)

Subcellular
localization
wolf

nucl 5, cyto 5, cyto_nucl 5	(predict for NP_001322439.1)
chlo 3, nucl 2, cysk_nucl 1, plas 1, cyto 1, mito 1, vacu 1, E.R. 1, golg_plas 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_173466.2)

Subcellular
localization
TargetP

other 7	(predict for NP_001322439.1)
other 7	(predict for NP_173466.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT1G20410 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
5.6	AT1G05950	uncharacterized protein	[detail]	837105
5.3	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	839442
5.2	PRMT4B	protein arginine methyltransferase 4B	[detail]	819878

Coexpressed
gene list

[Coexpressed gene list for AT1G20410]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

259571_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

259571_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

259571_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	838630
Refseq ID (protein)	NP_001322439.1
Refseq ID (protein)	NP_173466.2

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