[←][→] ath   At1g20540 Gene
functional annotation
Function   Transducin/WD40 repeat-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO MF
KEGG
Protein NP_173478.2 
BLAST NP_173478.2 
Orthologous [Ortholog page] DWA2 (ath)  LOC4346273 (osa)  LOC7474580 (ppo)  LOC7494687 (ppo)  LOC25490295 (mtr)  LOC100779030 (gma)  LOC101255790 (sly)  LOC103832076 (bra)  LOC103872844 (bra)  LOC123152628 (tae)  LOC123158252 (tae)  LOC123166164 (tae)  LOC123407744 (hvu) 
Subcellular
localization
wolf
chlo 3,  mito 3,  chlo_mito 3,  nucl 1,  cyto 1,  pero 1,  cyto_nucl 1,  cyto_mito 1,  cyto_pero 1,  mito_plas 1  (predict for NP_173478.2)
Subcellular
localization
TargetP
other 7  (predict for NP_173478.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 2
ath01240 Biosynthesis of cofactors 2
ath00564 Glycerophospholipid metabolism 2
Genes directly connected with AT1G20540 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.7 AT5G65740 zinc ion binding protein [detail] 836703
7.4 AT3G56830 YCF20-like protein (DUF565) [detail] 824850
7.1 AtPOT1a Nucleic acid-binding, OB-fold-like protein [detail] 815069
6.9 CSD3 copper/zinc superoxide dismutase 3 [detail] 831928
6.8 GalAK galacturonic acid kinase [detail] 820239
6.1 VHP2;2 Inorganic H pyrophosphatase family protein [detail] 838249
6.0 AT2G17320 pantothenate kinase [detail] 816239
5.8 AT2G38680 5'-nucleotidase / magnesium ion binding protein [detail] 818450
5.3 AT3G27420 bromodomain testis-specific protein [detail] 822363
5.1 PIS2 Putative CDP-diacylglycerol-inositol 3-phosphatidyltransferase 2 [detail] 830014
5.0 HEMG2 Flavin containing amine oxidoreductase family [detail] 831272
Coexpressed
gene list		 [Coexpressed gene list for AT1G20540]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259564_at
259564_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259564_at
259564_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259564_at
259564_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838642      
Refseq ID (protein) NP_173478.2 


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