[←][→] ath   At1g23820 Gene
functional annotation
Function   spermidine synthase  
GO BP
GO:0008295 [list] [network] spermidine biosynthetic process  (5 genes)  IDA  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10305 genes)  HDA ISM  
GO MF
GO:0004766 [list] [network] spermidine synthase activity  (3 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath00270 [list] [network] Cysteine and methionine metabolism (124 genes)
ath00330 [list] [network] Arginine and proline metabolism (54 genes)
ath00480 [list] [network] Glutathione metabolism (103 genes)
Protein NP_173794.3  NP_973900.2 
BLAST NP_173794.3  NP_973900.2 
Orthologous [Ortholog page] SPDSY (sly)  SPDS2 (ath)  LOC4342996 (osa)  LOC7459055 (ppo)  LOC7471485 (ppo)  LOC11405952 (mtr)  LOC25501297 (mtr)  LOC100776863 (gma)  LOC100788406 (gma)  LOC100790506 (gma)  LOC100792085 (gma)  LOC100792107 (gma)  LOC100809346 (gma)  LOC100812978 (gma)  LOC101263807 (sly)  LOC103829257 (bra)  LOC103835646 (bra)  LOC103840733 (bra)  LOC123152085 (tae)  LOC123152095 (tae)  LOC123157056 (tae)  LOC123162541 (tae)  LOC123165222 (tae)  LOC123165347 (tae)  LOC123411768 (hvu) 
Subcellular
localization
wolf
cyto 3,  chlo 2,  extr 2,  mito 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for NP_173794.3)
chlo 4,  cyto 3,  plas 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_973900.2)
Subcellular
localization
TargetP
other 9  (predict for NP_173794.3)
mito 6,  chlo 3  (predict for NP_973900.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath00480 Glutathione metabolism 3
ath00061 Fatty acid biosynthesis 2
ath01212 Fatty acid metabolism 2
ath01230 Biosynthesis of amino acids 2
Genes directly connected with SPDS1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.3 SPDS2 spermidine synthase 2 [detail] 843367
5.9 RAN3 RAN GTPase 3 [detail] 835612
5.8 AT5G58490 NAD(P)-binding Rossmann-fold superfamily protein [detail] 835962
Coexpressed
gene list		 [Coexpressed gene list for SPDS1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265172_at
265172_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265172_at
265172_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265172_at
265172_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838993      
Refseq ID (protein) NP_173794.3 
NP_973900.2 


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