[←][→] ath   AT1G27720 Gene
functional annotation
Function   TBP-associated factor 4B  
GO BP
GO:0006352 [list] [network] DNA-templated transcription, initiation  (56 genes)  IEA  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (206 genes)  IBA  
GO CC
GO:0005669 [list] [network] transcription factor TFIID complex  (19 genes)  IBA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0008134 [list] [network] transcription factor binding  (173 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IBA  
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
Protein NP_001320203.1  NP_001320204.1  NP_001320205.1  NP_001320206.1  NP_001320207.1  NP_001320208.1  NP_001320209.1  NP_001320210.1  NP_174093.3 
BLAST NP_001320203.1  NP_001320204.1  NP_001320205.1  NP_001320206.1  NP_001320207.1  NP_001320208.1  NP_001320209.1  NP_001320210.1  NP_174093.3 
Orthologous [Ortholog page] TAF4 (ath)  LOC4333214 (osa)  LOC7462851 (ppo)  LOC7497338 (ppo)  LOC25489943 (mtr)  LOC25489947 (mtr)  LOC25489951 (mtr)  LOC100252311 (vvi)  LOC100278950 (zma)  LOC100783067 (gma)  LOC100795389 (gma)  LOC100797127 (gma)  LOC100798514 (gma)  LOC101262209 (sly)  LOC103827992 (bra)  LOC103829049 (bra)  LOC103848801 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001320203.1)
nucl 9  (predict for NP_001320204.1)
nucl 10  (predict for NP_001320205.1)
nucl 9  (predict for NP_001320206.1)
nucl 9,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001320207.1)
nucl 9  (predict for NP_001320208.1)
nucl 9  (predict for NP_001320209.1)
nucl 10  (predict for NP_001320210.1)
nucl 10  (predict for NP_174093.3)
Subcellular
localization
TargetP
other 9  (predict for NP_001320203.1)
other 9  (predict for NP_001320204.1)
other 8  (predict for NP_001320205.1)
other 9  (predict for NP_001320206.1)
other 9  (predict for NP_001320207.1)
other 9  (predict for NP_001320208.1)
other 9  (predict for NP_001320209.1)
other 9  (predict for NP_001320210.1)
other 8  (predict for NP_174093.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 3
ath03440 Homologous recombination 3
Genes directly connected with TAF4B on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.2 AT5G39380 Plant calmodulin-binding protein-like protein [detail] 833934
3.8 AT4G13690 RNA-binding protein [detail] 827003
3.7 ATRAD17 RADIATION SENSITIVE 17 [detail] 836745
Coexpressed
gene list		 [Coexpressed gene list for TAF4B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261643_at
261643_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261643_at
261643_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261643_at
261643_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839665      
Refseq ID (protein) NP_001320203.1 
NP_001320204.1 
NP_001320205.1 
NP_001320206.1 
NP_001320207.1 
NP_001320208.1 
NP_001320209.1 
NP_001320210.1 
NP_174093.3 


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