[←][→] ath   AT1G27880 Gene
functional annotation
Function   DEAD/DEAH box RNA helicase family protein  
GO BP
GO:0006268 [list] [network] DNA unwinding involved in DNA replication  (18 genes)  IBA  
GO:0032508 [list] [network] DNA duplex unwinding  (29 genes)  IBA  
GO:0042631 [list] [network] cellular response to water deprivation  (35 genes)  IEP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (68 genes)  IBA  
GO:0006310 [list] [network] DNA recombination  (143 genes)  IBA  
GO:0006281 [list] [network] DNA repair  (295 genes)  IBA  
GO CC
GO:0005694 [list] [network] chromosome  (348 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0009378 [list] [network] four-way junction helicase activity  (7 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IEA  
KEGG
Protein NP_001320575.1  NP_174109.2 
BLAST NP_001320575.1  NP_174109.2 
Orthologous [Ortholog page] LOC4336217 (osa)  LOC7460032 (ppo)  LOC25501716 (mtr)  LOC100256355 (vvi)  LOC100811214 (gma)  LOC101256877 (sly)  LOC103641779 (zma)  LOC103829042 (bra) 
Subcellular
localization
wolf
nucl 3,  cysk_nucl 2,  chlo 1,  plas 1,  E.R. 1,  E.R._plas 1  (predict for NP_001320575.1)
nucl 3,  chlo 2,  cysk_nucl 2,  plas 1,  E.R. 1,  chlo_mito 1,  E.R._plas 1  (predict for NP_174109.2)
Subcellular
localization
TargetP
other 6,  chlo 6  (predict for NP_001320575.1)
other 6,  chlo 6  (predict for NP_174109.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03430 Mismatch repair 2
ath03440 Homologous recombination 2
ath03030 DNA replication 2
Genes directly connected with AT1G27880 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
12.2 SYN3 Rad21/Rec8-like family protein [detail] 825124
10.2 MSH7 MUTS homolog 7 [detail] 822040
10.2 AT3G27640 Transducin/WD40 repeat-like superfamily protein [detail] 822386
7.0 E2F3 E2F transcription factor 3 [detail] 818174
7.0 RAD9 cell cycle checkpoint control protein family [detail] 819713
6.5 AT4G24710 pachytene checkpoint-like protein [detail] 828573
5.3 AT2G46040 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein [detail] 819212
Coexpressed
gene list		 [Coexpressed gene list for AT1G27880]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245762_at
245762_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245762_at
245762_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245762_at
245762_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839681      
Refseq ID (protein) NP_001320575.1 
NP_174109.2 


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