[←][→] ath   AT1G28060 Gene
functional annotation
Function   Pre-mRNA-splicing factor 3  
GO BP
GO:0044030 [list] [network] regulation of DNA methylation  (15 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  IMP  
GO CC
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (27 genes)  IBA  
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001319094.1  NP_001321377.1  NP_174127.1 
BLAST NP_001319094.1  NP_001321377.1  NP_174127.1 
Orthologous [Ortholog page] LOC4346506 (osa)  LOC11428338 (mtr)  LOC100217215 (zma)  LOC100248403 (vvi)  LOC100279564 (zma)  LOC100797535 (gma)  LOC100802774 (gma)  LOC100812519 (gma)  LOC101255099 (sly)  LOC101258563 (sly)  LOC103835358 (bra)  LOC103838996 (bra) 
Subcellular
localization
wolf
nucl 9,  cyto 1  (predict for NP_001319094.1)
nucl 9,  cyto 1  (predict for NP_001321377.1)
nucl 9,  cyto 1  (predict for NP_174127.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001319094.1)
other 7  (predict for NP_001321377.1)
other 7  (predict for NP_174127.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 RNA transport 2
Genes directly connected with AT1G28060 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.5 AT2G29210 splicing factor PWI domain-containing protein [detail] 817470
8.4 AT1G74250 DNAJ heat shock N-terminal domain-containing protein [detail] 843765
7.8 RRC1 RNA recognition motif (RRM)-containing protein [detail] 832577
7.8 UNE6 LUC7 related protein [detail] 821276
7.6 ATO splicing factor-like protein [detail] 830503
7.3 AT2G33730 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 817938
7.0 PRP40C pre-mRNA-processing protein 40C [detail] 821521
6.0 AT5G20170 RNA polymerase II transcription mediator [detail] 832140
5.2 THO5 THO complex, subunit 5 [detail] 834304
Coexpressed
gene list		 [Coexpressed gene list for AT1G28060]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259582_at
259582_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259582_at
259582_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259582_at
259582_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 839699      
Refseq ID (protein) NP_001319094.1 
NP_001321377.1 
NP_174127.1 


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