[←][→] ath   AT1G42440 Gene
functional annotation
Function   pre-rRNA-processing TSR1-like protein  
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (27 genes)  IBA  
GO CC
GO:0030688 [list] [network] preribosome, small subunit precursor  (9 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0034511 [list] [network] U3 snoRNA binding  (4 genes)  IBA  
GO:0003924 [list] [network] GTPase activity  (169 genes)  IBA  
GO:0005525 [list] [network] GTP binding  (248 genes)  IBA  
KEGG
Protein NP_564480.1 
BLAST NP_564480.1 
Orthologous [Ortholog page] LOC4350322 (osa)  LOC7485634 (ppo)  LOC25490299 (mtr)  LOC100216810 (zma)  LOC100259903 (vvi)  LOC100812533 (gma)  LOC100819167 (gma)  LOC101256673 (sly)  LOC103849552 (bra)  LOC103871382 (bra) 
Subcellular
localization
wolf
chlo 6,  nucl 3,  mito 1,  cysk 1  (predict for NP_564480.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_564480.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03020 RNA polymerase 2
Genes directly connected with AT1G42440 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.4 AT1G27470 transducin family protein / WD-40 repeat family protein [detail] 839638
10.1 MGP3 male gametophyte defective 3 [detail] 843232
10.1 PUM24 pumilio 24 [detail] 820934
9.4 AT4G18905 Transducin/WD40 repeat-like superfamily protein [detail] 827625
6.7 FAS4 RNA helicase family protein [detail] 840232
Coexpressed
gene list		 [Coexpressed gene list for AT1G42440]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262272_at
262272_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262272_at
262272_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262272_at
262272_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 840848      
Refseq ID (protein) NP_564480.1 


The preparation time of this page was 0.2 [sec].