[←][→] ath   At1g49590 Gene
functional annotation
Function   C2H2 and C2HC zinc fingers superfamily protein      
GO BP
GO:0080188 [list] [network] gene silencing by RNA-directed DNA methylation  (38 genes)  IMP  
GO:0009845 [list] [network] seed germination  (99 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  IEA  
GO:0008380 [list] [network] RNA splicing  (191 genes)  IMP  
GO CC
GO:0015030 [list] [network] Cajal body  (12 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0003725 [list] [network] double-stranded RNA binding  (13 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (429 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (789 genes)  IDA  
GO:0003676 [list] [network] nucleic acid binding  (3100 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001154412.1  NP_001319183.1  NP_175382.1 
BLAST NP_001154412.1  NP_001319183.1  NP_175382.1 
Orthologous [Ortholog page] LOC4340481 (osa)  LOC7457519 (ppo)  LOC11445730 (mtr)  LOC100776500 (gma)  LOC100779677 (gma)  LOC100804274 (gma)  LOC101247074 (sly)  LOC103871383 (bra)  LOC123150874 (tae)  LOC123157979 (tae)  LOC123165227 (tae)  LOC123409629 (hvu) 
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001154412.1)
mito 6,  nucl 3  (predict for NP_001319183.1)
nucl 9  (predict for NP_175382.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001154412.1)
other 6  (predict for NP_001319183.1)
other 7  (predict for NP_175382.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with AT1G49590 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.4 AT3G04500 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 819606
6.3 EML1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [detail] 820389
6.1 AT2G15270 PRKR-interacting protein [detail] 816016
5.4 RHL1 root hair initiation protein root hairless 1 (RHL1) [detail] 841258
5.1 BIM2 BES1-interacting Myc-like protein 2 [detail] 843233
4.9 AT4G23910 uncharacterized protein [detail] 828491
Coexpressed
gene list		 [Coexpressed gene list for AT1G49590]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
261604_at
261604_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
261604_at
261604_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
261604_at
261604_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841383      
Refseq ID (protein) NP_001154412.1 
NP_001319183.1 
NP_175382.1 


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