ATTED-II : GeneID search result

[←][→] ath At1g49980 Gene

functional annotation

Function

DNA/RNA polymerases superfamily protein

GO BP

GO:0006281 [list] [network] DNA repair

(203 genes)

IDA

GO CC

GO:0009507 [list] [network] chloroplast	(5004 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(13880 genes)	ISM

GO MF

GO:0003887 [list] [network] DNA-directed DNA polymerase activity	(9 genes)	IDA IMP
GO:0003697 [list] [network] single-stranded DNA binding	(37 genes)	IDA

KEGG

Protein

NP_001320644.1 NP_001320645.1 NP_001320646.1 NP_001320647.1 NP_001320648.1 NP_001320649.1 NP_001320650.1 NP_001320651.1 NP_175420.3

BLAST

NP_001320644.1 NP_001320645.1 NP_001320646.1 NP_001320647.1 NP_001320648.1 NP_001320649.1 NP_001320650.1 NP_001320651.1 NP_175420.3

Orthologous

[Ortholog page] LOC7465079 (ppo) LOC11437908 (mtr) LOC100816973 (gma) LOC101263644 (sly) LOC103871374 (bra)

Subcellular
localization
wolf

nucl 10	(predict for NP_001320644.1)
nucl 4, cyto 2, nucl_plas 2, chlo 1, cysk 1	(predict for NP_001320645.1)
nucl 10	(predict for NP_001320646.1)
nucl 10	(predict for NP_001320647.1)
nucl 10	(predict for NP_001320648.1)
nucl 10	(predict for NP_001320649.1)
nucl 10	(predict for NP_001320650.1)
nucl 6, chlo 1, cysk 1, cyto 1, mito 1, cysk_plas 1	(predict for NP_001320651.1)
nucl 9	(predict for NP_175420.3)

Subcellular
localization
TargetP

other 8, chlo 3	(predict for NP_001320644.1)
other 6	(predict for NP_001320645.1)
other 8, chlo 3	(predict for NP_001320646.1)
other 8, chlo 3	(predict for NP_001320647.1)
other 8, chlo 3	(predict for NP_001320648.1)
other 8, chlo 3	(predict for NP_001320649.1)
other 8, chlo 3	(predict for NP_001320650.1)
other 6	(predict for NP_001320651.1)
other 8, chlo 3	(predict for NP_175420.3)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	3

Genes directly connected with AT1G49980 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
4.6	AT5G24000	keratin-associated protein (DUF819)	[detail]	832465
4.5	HEMG2	Flavin containing amine oxidoreductase family	[detail]	831272
4.5	SRD2	snRNA activating complex family protein	[detail]	839756

Coexpressed
gene list

[Coexpressed gene list for AT1G49980]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261629_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261629_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261629_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	841422
Refseq ID (protein)	NP_001320644.1
	NP_001320645.1
	NP_001320646.1
	NP_001320647.1
	NP_001320648.1
	NP_001320649.1
	NP_001320650.1
	NP_001320651.1
	NP_175420.3

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