[←][→] ath   AT1G50970 Gene
functional annotation
Function   Membrane trafficking VPS53 family protein  
GO BP
GO:0042147 [list] [network] retrograde transport, endosome to Golgi  (24 genes)  IBA  
GO CC
GO:0000938 [list] [network] GARP complex  (6 genes)  IBA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  ISM  
GO MF
KEGG
Protein NP_001323304.1  NP_001323305.1  NP_175510.2 
BLAST NP_001323304.1  NP_001323305.1  NP_175510.2 
Orthologous
Subcellular
localization
wolf
chlo 6,  cyto 2,  nucl 1,  extr 1,  vacu 1  (predict for NP_001323304.1)
cyto 4,  chlo 3,  nucl 1,  mito 1,  plas 1,  pero 1,  nucl_plas 1,  mito_plas 1  (predict for NP_001323305.1)
nucl 4,  cyto 3,  chlo 2,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_175510.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001323304.1)
other 5,  scret 3  (predict for NP_001323305.1)
scret 5,  other 5  (predict for NP_175510.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
Genes directly connected with AT1G50970 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.8 AT4G36980 CLK4-associating serine/arginine-rich protein [detail] 829852
6.0 LIG6 DNA LIGASE 6 [detail] 842991
5.6 AT1G53780 26S proteasome regulatory complex ATPase [detail] 841815
4.8 ALPHA-SNAP1 alpha-soluble NSF attachment protein 1 [detail] 824812
4.4 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 [detail] 827892
3.8 AT2G24945 transmembrane protein [detail] 817033
Coexpressed
gene list		 [Coexpressed gene list for AT1G50970]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256212_at
256212_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256212_at
256212_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256212_at
256212_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841519      
Refseq ID (protein) NP_001323304.1 
NP_001323305.1 
NP_175510.2 


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