[←][→] ath   AT1G54360 Gene
functional annotation
Function   TBP-ASSOCIATED FACTOR 6B  
GO BP
GO:0051123 [list] [network] RNA polymerase II preinitiation complex assembly  (9 genes)  IBA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (57 genes)  IBA  
GO:0006325 [list] [network] chromatin organization  (338 genes)  IBA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
Protein NP_001031187.2  NP_001185221.1  NP_001319224.1  NP_001322136.1  NP_175838.4  NP_974024.2 
BLAST NP_001031187.2  NP_001185221.1  NP_001319224.1  NP_001322136.1  NP_175838.4  NP_974024.2 
Orthologous
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001031187.2)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001185221.1)
nucl 6,  cyto 2,  cysk 1,  golg 1  (predict for NP_001319224.1)
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_001322136.1)
cyto 4,  nucl 3,  chlo 1,  nucl_plas 1  (predict for NP_175838.4)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_974024.2)
Subcellular
localization
TargetP
other 5  (predict for NP_001031187.2)
other 3  (predict for NP_001185221.1)
other 6  (predict for NP_001319224.1)
other 5  (predict for NP_001322136.1)
other 5  (predict for NP_175838.4)
other 6,  chlo 3  (predict for NP_974024.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with TAF6B on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.9 TTL transthyretin-like protein [detail] 835934
6.7 SLK3 SEUSS-like 3 [detail] 828656
6.6 LAF3 Amidohydrolase family [detail] 824751
6.3 AT2G01060 myb-like HTH transcriptional regulator family protein [detail] 814630
6.0 AT5G60940 Transducin/WD40 repeat-like superfamily protein [detail] 836215
5.8 AT4G30900 DNAse I-like superfamily protein [detail] 829214
5.7 HSL1 HSI2-like 1 [detail] 829332
5.6 AT1G22870 kinase family with ARM repeat domain-containing protein [detail] 838892
5.5 AT1G21930 transmembrane protein [detail] 838795
5.3 AT3G32940 RNA-binding KH domain-containing protein [detail] 823058
4.9 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 [detail] 820274
4.8 SNX2b sorting nexin 2B [detail] 830603
4.6 AT5G07770 Actin-binding FH2 protein [detail] 830670
Coexpressed
gene list		 [Coexpressed gene list for TAF6B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263001_at
263001_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263001_at
263001_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
263001_at
263001_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841877      
Refseq ID (protein) NP_001031187.2 
NP_001185221.1 
NP_001319224.1 
NP_001322136.1 
NP_175838.4 
NP_974024.2 


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