[←][→] ath   At1g54440 Gene
functional annotation
Function   Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1903705 [list] [network] positive regulation of siRNA production  (1 genes)  IMP  
GO:1904281 [list] [network] positive regulation of transcription by RNA polymerase V  (1 genes)  IMP  
GO:1990280 [list] [network] RNA localization to chromatin  (1 genes)  IMP  
GO:1902466 [list] [network] positive regulation of histone H3-K27 trimethylation  (2 genes)  IMP  
GO:0044030 [list] [network] regulation of DNA methylation  (19 genes)  IMP  
GO:0080188 [list] [network] gene silencing by RNA-directed DNA methylation  (38 genes)  IMP  
GO:0006346 [list] [network] DNA methylation-dependent heterochromatin formation  (46 genes)  IMP  
GO CC
GO:0005654 [list] [network] nucleoplasm  (253 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0000175 [list] [network] 3'-5'-exoribonuclease activity  (8 genes)  IMP  
GO:0003727 [list] [network] single-stranded RNA binding  (55 genes)  IDA  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_001185222.1  NP_001323051.1  NP_001323052.1  NP_001323053.1  NP_175846.3 
BLAST NP_001185222.1  NP_001323051.1  NP_001323052.1  NP_001323053.1  NP_175846.3 
Orthologous [Ortholog page] AT5G35910 (ath)  LOC4331677 (osa)  LOC7482373 (ppo)  LOC7491060 (ppo)  LOC9270208 (osa)  LOC11432643 (mtr)  LOC25495837 (mtr)  LOC100800470 (gma)  LOC100804872 (gma)  LOC100815329 (gma)  LOC100819332 (gma)  LOC101243936 (sly)  LOC103844335 (bra)  LOC103868297 (bra)  LOC112325313 (ppo)  LOC123043600 (tae)  LOC123084885 (tae)  LOC123093204 (tae)  LOC123098466 (tae)  LOC123119026 (tae)  LOC123180915 (tae)  LOC123429464 (hvu)  LOC123449486 (hvu) 
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001185222.1)
nucl 6,  chlo 1,  cyto 1  (predict for NP_001323051.1)
nucl 6,  chlo 1,  cyto 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001323052.1)
cyto 4,  nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001323053.1)
nucl 6,  chlo 1,  cyto 1,  plas 1,  cysk 1,  chlo_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_175846.3)
Subcellular
localization
TargetP
other 9  (predict for NP_001185222.1)
other 9  (predict for NP_001323051.1)
other 9  (predict for NP_001323052.1)
other 9  (predict for NP_001323053.1)
other 9  (predict for NP_175846.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
Genes directly connected with AT1G54440 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.3 APC2 anaphase-promoting complex/cyclosome 2 [detail] 815008
5.4 AT4G38890 FMN-linked oxidoreductases superfamily protein [detail] 830044
5.4 AT2G36720 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [detail] 818244
Coexpressed
gene list		 [Coexpressed gene list for AT1G54440]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262996_at
262996_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262996_at
262996_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262996_at
262996_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 841886      
Refseq ID (protein) NP_001185222.1 
NP_001323051.1 
NP_001323052.1 
NP_001323053.1 
NP_175846.3 


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