ATTED-II : GeneID search result

[←][→] ath At1g55350 Gene

functional annotation

Function

calpain-type cysteine protease family

GO BP

GO:0090628 [list] [network] plant epidermal cell fate specification	(1 genes)	IMP
GO:0097264 [list] [network] self proteolysis	(1 genes)	IDA
GO:0040014 [list] [network] regulation of multicellular organism growth	(3 genes)	IMP
GO:2000011 [list] [network] regulation of adaxial/abaxial pattern formation	(3 genes)	ISS
GO:0090392 [list] [network] sepal giant cell differentiation	(4 genes)	IMP
GO:0032877 [list] [network] positive regulation of DNA endoreduplication	(6 genes)	IMP
GO:2000014 [list] [network] regulation of endosperm development	(10 genes)	IMP
GO:0009934 [list] [network] regulation of meristem structural organization	(22 genes)	IMP
GO:2000024 [list] [network] regulation of leaf development	(22 genes)	IMP
GO:0001708 [list] [network] cell fate specification	(34 genes)	IMP
GO:0009960 [list] [network] endosperm development	(37 genes)	IMP
GO:0042127 [list] [network] regulation of cell population proliferation	(93 genes)	IMP
GO:0001558 [list] [network] regulation of cell growth	(132 genes)	IMP
GO:0009793 [list] [network] embryo development ending in seed dormancy	(697 genes)	IMP NAS

GO CC

GO:0010008 [list] [network] endosome membrane	(52 genes)	IDA
GO:0005789 [list] [network] endoplasmic reticulum membrane	(108 genes)	IDA
GO:0005783 [list] [network] endoplasmic reticulum	(856 genes)	IDA
GO:0005886 [list] [network] plasma membrane	(2529 genes)	HDA IDA
GO:0005737 [list] [network] cytoplasm	(13880 genes)	IDA

GO MF

GO:0004197 [list] [network] cysteine-type endopeptidase activity	(21 genes)	IDA
GO:0008234 [list] [network] cysteine-type peptidase activity	(82 genes)	IMP

KEGG

Protein

NP_001185238.1 NP_001319240.1 NP_001321273.1 NP_175932.2 NP_850966.1 NP_850967.1

BLAST

NP_001185238.1 NP_001319240.1 NP_001321273.1 NP_175932.2 NP_850966.1 NP_850967.1

Orthologous

[Ortholog page] LOC4330484 (osa) LOC7461353 (ppo) LOC7487061 (ppo) LOC11405221 (mtr) LOC100778679 (gma) LOC100809231 (gma) LOC101266917 (sly) LOC103871041 (bra) LOC123128152 (tae) LOC123137948 (tae) LOC123145251 (tae) LOC123401574 (hvu)

Subcellular
localization
wolf

plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_001185238.1)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_001319240.1)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_001321273.1)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_175932.2)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_850966.1)
plas 5, chlo 2, E.R. 1, nucl 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_850967.1)

Subcellular
localization
TargetP

other 5, scret 3	(predict for NP_001185238.1)
other 5, scret 3	(predict for NP_001319240.1)
other 5, scret 3	(predict for NP_001321273.1)
other 5, scret 3	(predict for NP_175932.2)
other 5, scret 3	(predict for NP_850966.1)
other 5, scret 3	(predict for NP_850967.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03250	Viral life cycle - HIV-1	3

Genes directly connected with DEK1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
9.1	RGD3	ROOT GROWTH DEFECTIVE 3	[detail]	824595
8.3	SDG2	SET domain protein 2	[detail]	827183
8.2	MBD9	methyl-CPG-binding domain 9	[detail]	821132
7.0	PUM2	pumilio 2	[detail]	817468
6.9	GSL12	glucan synthase-like 12	[detail]	831140
6.4	YDA	Protein kinase superfamily protein	[detail]	842674
5.5	HAC4	histone acetyltransferase of the CBP family 4	[detail]	842048
5.1	AT2G25050	actin-binding FH2 (formin 2) family protein	[detail]	817043

Coexpressed
gene list

[Coexpressed gene list for DEK1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

259646_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

259646_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

259646_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	841981
Refseq ID (protein)	NP_001185238.1
	NP_001319240.1
	NP_001321273.1
	NP_175932.2
	NP_850966.1
	NP_850967.1

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