[←][→] ath   AT1G56345 Gene
functional annotation
Function   Pseudouridine synthase family protein  
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (21 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (20 genes)  TAS  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG
Protein NP_001322451.1  NP_176031.2 
BLAST NP_001322451.1  NP_176031.2 
Orthologous [Ortholog page] LOC4352512 (osa)  LOC25484691 (mtr)  LOC100266581 (vvi)  LOC100272613 (zma)  LOC100790926 (gma)  LOC100803405 (gma)  LOC101246868 (sly)  LOC103849447 (bra) 
Subcellular
localization
wolf
chlo 5,  extr 2,  nucl 1,  cyto 1,  mito 1,  cyto_nucl 1,  E.R._vacu 1  (predict for NP_001322451.1)
chlo 8,  nucl 1,  mito 1,  extr 1  (predict for NP_176031.2)
Subcellular
localization
TargetP
scret 4  (predict for NP_001322451.1)
scret 4  (predict for NP_176031.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
Genes directly connected with AT1G56345 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.1 AT3G20890 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 821638
5.0 AT2G25100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 817048
5.0 PANC pantoate-beta-alanine ligase [detail] 834942
Coexpressed
gene list		 [Coexpressed gene list for AT1G56345]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259636_at
259636_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259636_at
259636_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259636_at
259636_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842088      
Refseq ID (protein) NP_001322451.1 
NP_176031.2 


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