[←][→] ath   At1g56345 Gene
functional annotation
Function   Pseudouridine synthase family protein      
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (9 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  IDA ISM  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (19 genes)  TAS  
KEGG
Protein NP_001322451.1  NP_176031.2 
BLAST NP_001322451.1  NP_176031.2 
Orthologous [Ortholog page] LOC4352512 (osa)  LOC18104013 (ppo)  LOC25484691 (mtr)  LOC100790926 (gma)  LOC100803405 (gma)  LOC101246868 (sly)  LOC103849447 (bra)  LOC123102576 (tae)  LOC123110762 (tae)  LOC123119763 (tae)  LOC123398344 (hvu) 
Subcellular
localization
wolf
chlo 5,  extr 2,  nucl 1,  cyto 1,  mito 1,  cyto_nucl 1,  E.R._vacu 1  (predict for NP_001322451.1)
chlo 8,  nucl 1,  mito 1,  extr 1  (predict for NP_176031.2)
Subcellular
localization
TargetP
scret 4  (predict for NP_001322451.1)
scret 4  (predict for NP_176031.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 6
ath04145 Phagosome 2
Genes directly connected with AT1G56345 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.0 AT2G25100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 817048
5.4 LPPepsilon1 Phosphatidic acid phosphatase (PAP2) family protein [detail] 824256
5.0 AT3G20890 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 821638
Coexpressed
gene list		 [Coexpressed gene list for AT1G56345]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259636_at
259636_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259636_at
259636_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259636_at
259636_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842088      
Refseq ID (protein) NP_001322451.1 
NP_176031.2 


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