[←][→] ath   AT1G60080 Gene
functional annotation
Function   3'-5'-exoribonuclease family protein  
GO BP
GO:0034473 [list] [network] U1 snRNA 3'-end processing  (4 genes)  IBA  
GO:0034476 [list] [network] U5 snRNA 3'-end processing  (4 genes)  IBA  
GO:0071042 [list] [network] nuclear polyadenylation-dependent mRNA catabolic process  (4 genes)  IBA  
GO:0071038 [list] [network] nuclear polyadenylation-dependent tRNA catabolic process  (7 genes)  IBA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (8 genes)  IBA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (9 genes)  IBA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (10 genes)  IBA  
GO:0034427 [list] [network] nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'  (12 genes)  IBA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (14 genes)  IBA  
GO:0043928 [list] [network] exonucleolytic catabolism of deadenylated mRNA  (16 genes)  IBA  
GO:0016075 [list] [network] rRNA catabolic process  (17 genes)  IBA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (12 genes)  IBA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (13 genes)  IBA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_176216.1 
BLAST NP_176216.1 
Orthologous [Ortholog page] LOC4350355 (osa)  LOC7473620 (ppo)  LOC7484014 (ppo)  LOC11420842 (mtr)  LOC100193137 (zma)  LOC100253817 (vvi)  LOC100282327 (zma)  LOC100776087 (gma)  LOC100812232 (gma)  LOC101259053 (sly)  LOC103838559 (bra) 
Subcellular
localization
wolf
plas 3,  chlo 2,  E.R. 2,  cyto_plas 2  (predict for NP_176216.1)
Subcellular
localization
TargetP
other 6  (predict for NP_176216.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03018 RNA degradation 3
ath03020 RNA polymerase 2
Genes directly connected with AT1G60080 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.0 AT2G44510 CDK inhibitor P21 binding protein [detail] 819058
9.5 ATRPAC42 DNA-directed RNA polymerase family protein [detail] 842377
9.1 RRP41 3'-5'-exoribonuclease family protein [detail] 825335
5.6 AT1G06790 RNA polymerase Rpb7 N-terminal domain-containing protein [detail] 837190
Coexpressed
gene list		 [Coexpressed gene list for AT1G60080]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263729_at
263729_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263729_at
263729_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
263729_at
263729_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842303      
Refseq ID (protein) NP_176216.1 


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