[←][→] ath   AT1G60170 Gene
functional annotation
Function   pre-mRNA processing ribonucleoprotein binding region-containing protein  
GO BP
GO:0000244 [list] [network] spliceosomal tri-snRNP complex assembly  (5 genes)  IEA  
GO:0006346 [list] [network] methylation-dependent chromatin silencing  (7 genes)  IMP  
GO:0070417 [list] [network] cellular response to cold  (37 genes)  IMP  
GO:0009845 [list] [network] seed germination  (93 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO:0008380 [list] [network] RNA splicing  (272 genes)  IMP  
GO:0009409 [list] [network] response to cold  (411 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  NAS  
GO CC
GO:0005687 [list] [network] U4 snRNP  (9 genes)  IBA  
GO:0015030 [list] [network] Cajal body  (16 genes)  IDA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (27 genes)  IEA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_564754.1 
BLAST NP_564754.1 
Orthologous [Ortholog page] LOC4330613 (osa)  LOC4336619 (osa)  LOC4342372 (osa)  LOC7492800 (ppo)  LOC11440004 (mtr)  LOC100194058 (zma)  LOC100262218 (vvi)  LOC100792415 (gma)  LOC100818919 (gma)  LOC101261054 (sly)  LOC103829722 (bra) 
Subcellular
localization
wolf
chlo 3,  nucl 2,  plas 2,  cysk_nucl 1,  cyto 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for NP_564754.1)
Subcellular
localization
TargetP
other 7  (predict for NP_564754.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 RNA transport 3
ath03015 mRNA surveillance pathway 2
ath03050 Proteasome 2
Genes directly connected with emb1220 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.1 RPT6A regulatory particle triple-A ATPase 6A [detail] 832121
6.9 LIF2 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 827998
6.8 HMG high mobility group [detail] 822505
5.7 AT1G71350 eukaryotic translation initiation factor SUI1 family protein [detail] 843476
5.6 AT1G70570 anthranilate phosphoribosyltransferase [detail] 843394
Coexpressed
gene list		 [Coexpressed gene list for emb1220]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264221_s_at
264221_s_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264221_s_at
264221_s_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264221_s_at
264221_s_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842312      
Refseq ID (protein) NP_564754.1 


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