ATTED-II : GeneID search result

[←][→] ath AT1G60590 Gene

functional annotation

Function

Pectin lyase-like superfamily protein

GO BP

GO:0071555 [list] [network] cell wall organization	(538 genes)	IEA
GO:0005975 [list] [network] carbohydrate metabolic process	(995 genes)	IEA

GO CC

GO:0005576 [list] [network] extracellular region

(3363 genes)

IEA ISM

GO MF

GO:0004650 [list] [network] polygalacturonase activity	(52 genes)	IEA
GO:0016829 [list] [network] lyase activity	(412 genes)	IEA

KEGG

Protein

NP_564758.2

BLAST

NP_564758.2

Orthologous

[Ortholog page] LOC732602 (gma) AT1G10640 (ath) LOC4326573 (osa) LOC4339708 (osa) LOC7492392 (ppo) LOC11407103 (mtr) LOC25501370 (mtr) LOC100241353 (vvi) LOC100273736 (zma) LOC100282388 (zma) LOC100284545 (zma) LOC100783813 (gma) LOC101246713 (sly) LOC103838503 (bra) LOC103843286 (bra) LOC103868082 (bra) LOC103871846 (bra) LOC107276443 (osa)

Subcellular
localization
wolf

chlo 8, nucl 1, mito 1, extr 1

(predict for NP_564758.2)

Subcellular
localization
TargetP

mito 2

(predict for NP_564758.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT1G60590 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
12.9	AT1G10640	Pectin lyase-like superfamily protein	[detail]	837607
6.4	AT1G48100	Pectin lyase-like superfamily protein	[detail]	841228
6.4	AT1G23205	Plant invertase/pectin methylesterase inhibitor superfamily protein	[detail]	838929
4.8	AT1G20870	HSP20-like chaperones superfamily protein	[detail]	838680
4.0	ACR1	ACT domain repeat 1	[detail]	836718

Coexpressed
gene list

[Coexpressed gene list for AT1G60590]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

264931_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

264931_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

264931_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	842353
Refseq ID (protein)	NP_564758.2

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