[←][→] ath   AT1G60850 Gene
functional annotation
Function   DNA-directed RNA polymerase family protein  
GO BP
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (570 genes)  IEA  
KEGG ath03020 [list] [network] RNA polymerase (45 genes)
Protein NP_001320360.1  NP_176282.1  NP_849833.1  NP_974057.1 
BLAST NP_001320360.1  NP_176282.1  NP_849833.1  NP_974057.1 
Orthologous [Ortholog page] RPAC43 (ath)  LOC4332531 (osa)  LOC7485118 (ppo)  LOC11444317 (mtr)  LOC100191943 (zma)  LOC100248046 (vvi)  LOC100786622 (gma)  LOC100818494 (gma)  LOC101248458 (sly)  LOC103829922 (bra)  LOC103838484 (bra) 
Subcellular
localization
wolf
cyto 7,  mito 1,  plas 1,  pero 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for NP_001320360.1)
cyto 7,  mito 1,  plas 1,  pero 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for NP_176282.1)
cyto 7,  mito 1,  plas 1,  pero 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for NP_849833.1)
cyto 5,  cysk 5  (predict for NP_974057.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001320360.1)
other 7  (predict for NP_176282.1)
other 7  (predict for NP_849833.1)
other 7  (predict for NP_974057.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03020 RNA polymerase 3
ath03018 RNA degradation 2
Genes directly connected with ATRPAC42 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.9 PUM24 pumilio 24 [detail] 820934
11.6 YAO Transducin/WD40 repeat-like superfamily protein [detail] 825889
11.6 AT2G18900 Transducin/WD40 repeat-like superfamily protein [detail] 816406
10.8 AT1G65030 Transducin/WD40 repeat-like superfamily protein [detail] 842811
10.6 AT1G04945 HIT-type Zinc finger family protein [detail] 5007664
10.5 TIM50 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [detail] 842040
9.5 AT1G60080 3'-5'-exoribonuclease family protein [detail] 842303
9.5 AT5G38890 Nucleic acid-binding, OB-fold-like protein [detail] 833880
8.5 AT4G36680 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 829821
8.1 AT1G08220 ATPase complex subunit [detail] 837343
8.0 CYCH;1 cyclin H;1 [detail] 832824
7.3 RPS10 ribosomal protein S10 [detail] 821799
7.0 eIF6A Translation initiation factor IF6 [detail] 824728
6.7 RPAC43 RNA polymerase I subunit 43 [detail] 842356
6.2 AT1G08845 Ribosomal L18p/L5e family protein [detail] 837407
Coexpressed
gene list		 [Coexpressed gene list for ATRPAC42]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259908_at
259908_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259908_at
259908_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259908_at
259908_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842377      
Refseq ID (protein) NP_001320360.1 
NP_176282.1 
NP_849833.1 
NP_974057.1 


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