ATTED-II : GeneID search result

[←][→] ath At1g60860 Gene

functional annotation

Function

ARF-GAP domain 2

Plant GARDEN Plant GARDEN JBrowse

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(13880 genes)

IEA ISM

GO MF

KEGG

ath04144 [list] [network] Endocytosis (158 genes)

Protein

NP_001322221.1 NP_001322222.1 NP_176283.1

BLAST

NP_001322221.1 NP_001322222.1 NP_176283.1

Orthologous

[Ortholog page] AGD4 (ath) LOC4330061 (osa) LOC25492818 (mtr) LOC100796006 (gma) LOC100796740 (gma) LOC101251466 (sly) LOC103838481 (bra) LOC103871864 (bra) LOC123127697 (tae) LOC123137554 (tae) LOC123144894 (tae) LOC123401063 (hvu)

Subcellular
localization
wolf

nucl 6, cyto 4	(predict for NP_001322221.1)
nucl 6, cyto 4	(predict for NP_001322222.1)
nucl 6, cyto 4	(predict for NP_176283.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001322221.1)
other 8	(predict for NP_001322222.1)
other 9	(predict for NP_176283.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AGD2 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.3	NEK1	NIMA-related serine/threonine kinase 1	[detail]	841893
5.6	AT2G28360	SIT4 phosphatase-associated family protein	[detail]	817384
5.3	AtPOT1a	Nucleic acid-binding, OB-fold-like protein	[detail]	815069
5.1	BRX-LIKE3	BREVIS RADIX-like 3	[detail]	841858

Coexpressed
gene list

[Coexpressed gene list for AGD2]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

259907_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

259907_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

259907_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	842378
Refseq ID (protein)	NP_001322221.1
	NP_001322222.1
	NP_176283.1

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