ATTED-II : GeneID search result

[←][→] ath At1g63020 Gene

functional annotation

Function

nuclear RNA polymerase D1A

GO BP

GO:0010495 [list] [network] siRNA-mediated long-distance post-transcriptional gene silencing	(3 genes)	IMP
GO:0030422 [list] [network] siRNA processing	(30 genes)	IGI IMP
GO:0006351 [list] [network] DNA-templated transcription	(159 genes)	IEA
GO:0031047 [list] [network] RNA-mediated gene silencing	(176 genes)	IMP

GO CC

GO:0000418 [list] [network] RNA polymerase IV complex	(16 genes)	IDA
GO:0005654 [list] [network] nucleoplasm	(253 genes)	IDA
GO:0005634 [list] [network] nucleus	(10305 genes)	IDA ISM

GO MF

GO:0005515 [list] [network] protein binding

(5066 genes)

IPI

KEGG

ath03020 [list] [network] RNA polymerase (52 genes)

Protein

NP_001185298.1 NP_001320708.1 NP_001320709.1 NP_001320710.1 NP_176490.2

BLAST

NP_001185298.1 NP_001320708.1 NP_001320709.1 NP_001320710.1 NP_176490.2

Orthologous

[Ortholog page] LOC778259 (sly) LOC4336722 (osa) LOC4347810 (osa) LOC7490920 (ppo) LOC11436803 (mtr) LOC100796185 (gma) LOC100810483 (gma) LOC103838307 (bra) LOC103847833 (bra) LOC117132791 (bra) LOC123038976 (tae) LOC123113199 (tae) LOC123180590 (tae) LOC123426175 (hvu)

Subcellular
localization
wolf

nucl 3, chlo 3, cysk_nucl 2, cyto 1, mito 1, plas 1, vacu 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1	(predict for NP_001185298.1)
nucl 3, plas 2, E.R. 2, E.R._plas 2	(predict for NP_001320708.1)
nucl 3, chlo 3, cysk_nucl 2, cyto 1, mito 1, plas 1, vacu 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1	(predict for NP_001320709.1)
chlo 3, nucl 2, E.R. 2, cysk_nucl 1, mito 1, plas 1, vacu 1, mito_plas 1	(predict for NP_001320710.1)
nucl 3, chlo 3, cysk_nucl 2, cyto 1, mito 1, plas 1, vacu 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1	(predict for NP_176490.2)

Subcellular
localization
TargetP

other 8	(predict for NP_001185298.1)
other 8	(predict for NP_001320708.1)
other 8	(predict for NP_001320709.1)
other 8	(predict for NP_001320710.1)
other 8	(predict for NP_176490.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2
ath03440	Homologous recombination	2

Genes directly connected with NRPD1A on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
5.7	DCL3	dicer-like 3	[detail]	823508
5.1	CHR38	chromatin remodeling 38	[detail]	823287
4.8	AT1G65150	TRAF-like family protein	[detail]	842822

Coexpressed
gene list

[Coexpressed gene list for NRPD1A]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261100_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261100_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261100_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	842605
Refseq ID (protein)	NP_001185298.1
	NP_001320708.1
	NP_001320709.1
	NP_001320710.1
	NP_176490.2

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