[←][→] ath   At1g64860 Gene
functional annotation
Function   sigma factor A      
GO BP
GO:0071461 [list] [network] cellular response to redox state  (2 genes)  IDA  
GO:0080005 [list] [network] photosystem stoichiometry adjustment  (3 genes)  IDA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (26 genes)  IDA TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (146 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IDA  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1660 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001319322.1  NP_176666.1 
BLAST NP_001319322.1  NP_176666.1 
Orthologous [Ortholog page] LOC542980 (tae)  LOC4344738 (osa)  LOC7459204 (ppo)  LOC7493891 (ppo)  LOC25480544 (mtr)  LOC100794548 (gma)  LOC100801884 (gma)  LOC101252856 (sly)  LOC101263418 (sly)  LOC103853304 (bra)  LOC123147203 (tae)  LOC123157122 (tae)  LOC123407383 (hvu) 
Subcellular
localization
wolf
cyto 5,  chlo 3,  mito 1  (predict for NP_001319322.1)
cyto 6,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_176666.1)
Subcellular
localization
TargetP
other 3  (predict for NP_001319322.1)
other 3  (predict for NP_176666.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 5
ath00900 Terpenoid backbone biosynthesis 2
ath00906 Carotenoid biosynthesis 2
Genes directly connected with SIGA on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
11.6 HEMA1 Glutamyl-tRNA reductase family protein [detail] 842198
10.1 ATH13 ABC2 homolog 13 [detail] 836618
8.4 HCF107 high chlorophyll fluorescent 107 [detail] 820961
7.8 PSY PHYTOENE SYNTHASE [detail] 831587
6.4 AT1G44000 STAY-GREEN-like protein [detail] 841000
3.6 AT2G40520 Nucleotidyltransferase family protein [detail] 818647
Coexpressed
gene list		 [Coexpressed gene list for SIGA]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262879_at
262879_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262879_at
262879_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262879_at
262879_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842794      
Refseq ID (protein) NP_001319322.1 
NP_176666.1 


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