[←][→] ath   AT1G65660 Gene
functional annotation
Function   Pre-mRNA splicing Prp18-interacting factor  
GO BP
GO:0008284 [list] [network] positive regulation of cell population proliferation  (26 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IEA  
GO:0008380 [list] [network] RNA splicing  (272 genes)  TAS  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0000386 [list] [network] second spliceosomal transesterification activity  (7 genes)  IBA  
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding  (9 genes)  IEA  
GO:0003727 [list] [network] single-stranded RNA binding  (64 genes)  TAS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_564859.2 
BLAST NP_564859.2 
Orthologous [Ortholog page] SMP2 (ath)  LOC4344572 (osa)  LOC7453862 (ppo)  LOC25499261 (mtr)  LOC100249416 (vvi)  LOC100502246 (zma)  LOC100778457 (gma)  LOC100797503 (gma)  LOC101252328 (sly)  LOC101260949 (sly)  LOC103629005 (zma)  LOC103844304 (bra) 
Subcellular
localization
wolf
nucl 6,  cyto 1,  mito 1  (predict for NP_564859.2)
Subcellular
localization
TargetP
other 7  (predict for NP_564859.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
Genes directly connected with SMP1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.7 AT5G22080 Chaperone DnaJ-domain superfamily protein [detail] 832269
7.4 CDC5 cell division cycle 5 [detail] 837506
7.0 TGH SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [detail] 832372
6.5 GTE6 general transcription factor group E6 [detail] 824393
5.8 AT5G50780 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [detail] 835150
5.5 AT1G06200 Peptidase S24/S26A/S26B/S26C family protein [detail] 837129
Coexpressed
gene list		 [Coexpressed gene list for SMP1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264633_at
264633_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264633_at
264633_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264633_at
264633_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842877      
Refseq ID (protein) NP_564859.2 


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