[←][→] ath   At1g77890 Gene
functional annotation
Function   DNA-directed RNA polymerase II protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0048102 [list] [network] autophagic cell death  (2 genes)  IGI  
GO:0097305 [list] [network] response to alcohol  (1209 genes)  IEA  
GO:0048367 [list] [network] shoot system development  (1318 genes)  IEA  
GO:0007165 [list] [network] signal transduction  (2054 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001117614.1  NP_001185423.1  NP_001323211.1  NP_001323212.1  NP_177912.2 
BLAST NP_001117614.1  NP_001185423.1  NP_001323211.1  NP_001323212.1  NP_177912.2 
Orthologous [Ortholog page] LOC103832217 (bra) 
Subcellular
localization
wolf
nucl 5,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1  (predict for NP_001117614.1)
nucl 4,  chlo 2,  cyto_nucl 2,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for NP_001185423.1)
nucl 4,  chlo 2,  cyto_nucl 2,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for NP_001323211.1)
mito 4,  nucl 4,  cyto_mito 2,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001323212.1)
nucl 4,  chlo 2,  cyto_nucl 2,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for NP_177912.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001117614.1)
other 7  (predict for NP_001185423.1)
other 7  (predict for NP_001323211.1)
other 7  (predict for NP_001323212.1)
other 7  (predict for NP_177912.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04136 Autophagy - other 3
Genes directly connected with AT1G77890 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.9 G18F autophagy 18 F-like protein [detail] 835562
6.2 LPAT4 lysophosphatidyl acyltransferase 4 [detail] 843840
5.7 RGLG2 RING domain ligase2 [detail] 831293
3.8 ATG18B autophagy 18 B-like protein [detail] 829174
Coexpressed
gene list		 [Coexpressed gene list for AT1G77890]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262183_at
262183_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262183_at
262183_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262183_at
262183_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 844125      
Refseq ID (protein) NP_001117614.1 
NP_001185423.1 
NP_001323211.1 
NP_001323212.1 
NP_177912.2 


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