ATTED-II : GeneID search result

[←][→] ath AT1G78390 Gene

functional annotation

Function

nine-cis-epoxycarotenoid dioxygenase 9

GO BP

GO:0016121 [list] [network] carotene catabolic process	(9 genes)	IBA
GO:0009688 [list] [network] abscisic acid biosynthetic process	(16 genes)	TAS
GO:0010162 [list] [network] seed dormancy process	(32 genes)	IGI
GO:0055114 [list] [network] oxidation-reduction process	(1468 genes)	IEA

GO CC

GO:0009570 [list] [network] chloroplast stroma	(750 genes)	IBA IDA
GO:0009507 [list] [network] chloroplast	(5095 genes)	IBA ISM

GO MF

GO:0045549 [list] [network] 9-cis-epoxycarotenoid dioxygenase activity	(7 genes)	IDA TAS
GO:0010436 [list] [network] carotenoid dioxygenase activity	(9 genes)	IBA
GO:0046872 [list] [network] metal ion binding	(3180 genes)	IEA

KEGG

ath00906 [list] [network] Carotenoid biosynthesis (29 genes)

Protein

NP_177960.1

BLAST

NP_177960.1

Orthologous

[Ortholog page] NCED1 (sly) LOC732819 (zma) NCED3 (ath) NCED6 (ath) NCED2 (ath) NCED5 (ath) LOC4333566 (osa) LOC4342424 (osa) LOC7472358 (ppo) LOC7493195 (ppo) LOC7497045 (ppo) LOC9270250 (osa) LOC25487063 (mtr) NCED1 (vvi) NCED2 (vvi) LOC100244362 (vvi) LOC100281136 (zma) LOC100281391 (zma) NCED2 (sly) LOC100501444 (zma) LOC100814399 (gma) LOC101246826 (sly) LOC103626043 (zma) LOC103648268 (zma) LOC103828685 (bra) LOC103832319 (bra) LOC103840429 (bra) LOC103842019 (bra) LOC103853125 (bra) LOC103856252 (bra) LOC103860984 (bra) LOC103870025 (bra)

Subcellular
localization
wolf

chlo 9

(predict for NP_177960.1)

Subcellular
localization
TargetP

other 4

(predict for NP_177960.1)

Gene coexpression

Network^*for
coexpressed
genes

Coexpressed
gene list

[Coexpressed gene list for NCED9]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

260797_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

260797_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

260797_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	844175
Refseq ID (protein)	NP_177960.1

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