[←][→] ath   At1g79540 Gene
functional annotation
Function   Pentatricopeptide repeat (PPR) superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4228 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
KEGG
Protein NP_178072.1 
BLAST NP_178072.1 
Orthologous [Ortholog page] LOC4346390 (osa)  LOC7473611 (ppo)  LOC11419088 (mtr)  LOC11424792 (mtr)  LOC25489851 (mtr)  LOC100788461 (gma)  LOC100789393 (gma)  LOC101264179 (sly)  LOC103853197 (bra)  LOC120577508 (mtr)  LOC123452498 (hvu) 
Subcellular
localization
wolf
nucl 4,  chlo 4,  mito 1  (predict for NP_178072.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_178072.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT1G79540 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.0 AT1G22960 Pentatricopeptide repeat (PPR) superfamily protein [detail] 838903
7.8 AT1G71210 Pentatricopeptide repeat (PPR) superfamily protein [detail] 843461
7.7 AT5G65560 Pentatricopeptide repeat (PPR) superfamily protein [detail] 836682
7.6 AT2G21090 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 816644
7.4 AT3G51320 Pentatricopeptide repeat (PPR) superfamily protein [detail] 824295
7.1 AT1G11630 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 837707
6.0 POR C-CAP/cofactor C-like domain-containing protein [detail] 830151
5.9 SUVH2 SU(VAR)3-9 homolog 2 [detail] 817892
5.8 VRN5 Fibronectin type III domain-containing protein [detail] 822034
5.8 AT1G64580 Pentatricopeptide repeat (PPR) superfamily protein [detail] 842766
Coexpressed
gene list		 [Coexpressed gene list for AT1G79540]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262938_at
262938_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262938_at
262938_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262938_at
262938_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 844292      
Refseq ID (protein) NP_178072.1 


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