ATTED-II : GeneID search result

[←][→] ath AT1G79590 Gene

functional annotation

Function

syntaxin of plants 52

GO BP

GO:0006906 [list] [network] vesicle fusion	(30 genes)	IBA
GO:0048278 [list] [network] vesicle docking	(37 genes)	IBA
GO:0016192 [list] [network] vesicle-mediated transport	(417 genes)	TAS
GO:0006886 [list] [network] intracellular protein transport	(516 genes)	IBA

GO CC

GO:0031201 [list] [network] SNARE complex	(32 genes)	IBA
GO:0031902 [list] [network] late endosome membrane	(61 genes)	IEA
GO:0010008 [list] [network] endosome membrane	(162 genes)	NAS TAS
GO:0005773 [list] [network] vacuole	(1133 genes)	IDA
GO:0005794 [list] [network] Golgi apparatus	(1430 genes)	IEA ISM
GO:0012505 [list] [network] endomembrane system	(2531 genes)	IBA
GO:0016021 [list] [network] integral component of membrane	(4803 genes)	IBA

GO MF

GO:0005484 [list] [network] SNAP receptor activity	(39 genes)	IBA TAS
GO:0000149 [list] [network] SNARE binding	(54 genes)	IBA

KEGG

ath04130 [list] [network] SNARE interactions in vesicular transport (44 genes)

Protein

NP_001031301.1 NP_001321707.1 NP_565213.1

BLAST

NP_001031301.1 NP_001321707.1 NP_565213.1

Orthologous

[Ortholog page] SYP51 (ath) LOC4328103 (osa) LOC4345157 (osa) LOC7479643 (ppo) LOC11445318 (mtr) LOC25500903 (mtr) LOC100193337 (zma) LOC100217094 (zma) LOC100250369 (vvi) LOC100782666 (gma) LOC100794038 (gma) LOC100799465 (gma) LOC101252340 (sly) LOC101262735 (sly) LOC103832523 (bra) LOC103842859 (bra) LOC103853203 (bra) LOC103872414 (bra) LOC104878462 (vvi)

Subcellular
localization
wolf

golg 4, vacu 2, plas 1, E.R._vacu 1, chlo 1, cyto 1, E.R. 1, pero 1, nucl_plas 1, cyto_pero 1, cysk_plas 1, mito_plas 1, cyto_E.R. 1	(predict for NP_001031301.1)
golg 4, plas 1, nucl 1, E.R._plas 1, chlo 1, cyto 1, mito 1, cysk 1, chlo_mito 1	(predict for NP_001321707.1)
golg 4, vacu 2, plas 1, E.R._vacu 1, chlo 1, cyto 1, E.R. 1, pero 1, nucl_plas 1, cyto_pero 1, cysk_plas 1, mito_plas 1, cyto_E.R. 1	(predict for NP_565213.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001031301.1)
scret 2	(predict for NP_001321707.1)
other 7	(predict for NP_565213.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	4

Genes directly connected with SYP52 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.6	SYP51	syntaxin of plants 51	[detail]	838193
7.3	SYP71	syntaxin of plants 71	[detail]	820132
7.2	VAMP714	vesicle-associated membrane protein 714	[detail]	832297
5.8	AT5G53310	myosin heavy chain-like protein	[detail]	835412

Coexpressed
gene list

[Coexpressed gene list for SYP52]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

261403_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

261403_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

261403_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	844297
Refseq ID (protein)	NP_001031301.1
	NP_001321707.1
	NP_565213.1

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