[←][→] ath   At1g80270 Gene
functional annotation
Function   PENTATRICOPEPTIDE REPEAT 596    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0030154 [list] [network] cell differentiation  (1176 genes)  IEA  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
KEGG
Protein NP_001077853.1  NP_001321806.1  NP_001321807.1  NP_178143.1  NP_974190.1 
BLAST NP_001077853.1  NP_001321806.1  NP_001321807.1  NP_178143.1  NP_974190.1 
Orthologous [Ortholog page] LOC778342 (sly)  AT3G15590 (ath)  AT1G15480 (ath)  LOC4326909 (osa)  LOC4342742 (osa)  LOC4351621 (osa)  LOC7460260 (ppo)  LOC7464096 (ppo)  LOC7479672 (ppo)  LOC11416123 (mtr)  LOC11429425 (mtr)  LOC100500196 (gma)  LOC100805354 (gma)  LOC100806780 (gma)  LOC103830428 (bra)  LOC103869899 (bra)  LOC103872343 (bra)  LOC123061137 (tae)  LOC123069719 (tae)  LOC123078206 (tae)  LOC123443558 (hvu) 
Subcellular
localization
wolf
mito 5,  chlo 4,  cyto_mito 3  (predict for NP_001077853.1)
mito 5,  chlo 4,  cyto_mito 3  (predict for NP_001321806.1)
mito 5,  chlo 4,  cyto_mito 3  (predict for NP_001321807.1)
mito 5,  chlo 4,  cyto_mito 3  (predict for NP_178143.1)
mito 5,  chlo 4,  cyto_mito 3  (predict for NP_974190.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001077853.1)
mito 8  (predict for NP_001321806.1)
mito 8  (predict for NP_001321807.1)
mito 8  (predict for NP_178143.1)
mito 8  (predict for NP_974190.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
Genes directly connected with PPR596 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
13.2 AT5G02050 Mitochondrial glycoprotein family protein [detail] 831729
12.5 AT3G18600 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 821391
12.5 AT4G04940 transducin family protein / WD-40 repeat family protein [detail] 825833
12.2 AT5G09840 Putative endonuclease or glycosyl hydrolase [detail] 830844
11.7 AT3G02650 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 821285
10.9 PYRD pyrimidine d [detail] 832394
10.7 PRMT1A protein arginine methyltransferase 1A [detail] 816486
10.7 AT1G02370 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 837735
8.8 AT4G01990 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 828172
8.3 AT1G64880 Ribosomal protein S5 family protein [detail] 842796
8.0 AT3G18240 Ribosomal protein S24/S35 [detail] 821352
Coexpressed
gene list		 [Coexpressed gene list for PPR596]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260331_at
260331_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260331_at
260331_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260331_at
260331_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 844367      
Refseq ID (protein) NP_001077853.1 
NP_001321806.1 
NP_001321807.1 
NP_178143.1 
NP_974190.1 


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