ATTED-II : GeneID search result

[←][→] ath AT2G01570 Gene

functional annotation

Function

GRAS family transcription factor family protein

GO BP

GO:0033206 [list] [network] meiotic cytokinesis	(8 genes)	IMP
GO:2000033 [list] [network] regulation of seed dormancy process	(13 genes)	IBA IGI
GO:0009938 [list] [network] negative regulation of gibberellic acid mediated signaling pathway	(15 genes)	IBA IGI
GO:0010187 [list] [network] negative regulation of seed germination	(23 genes)	IBA IGI
GO:0009863 [list] [network] salicylic acid mediated signaling pathway	(42 genes)	IBA
GO:0010218 [list] [network] response to far red light	(54 genes)	IEP
GO:2000377 [list] [network] regulation of reactive oxygen species metabolic process	(54 genes)	IBA IGI
GO:0042538 [list] [network] hyperosmotic salinity response	(57 genes)	IBA IGI
GO:0042176 [list] [network] regulation of protein catabolic process	(58 genes)	IMP
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway	(71 genes)	TAS
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway	(71 genes)	IBA IGI
GO:0010029 [list] [network] regulation of seed germination	(84 genes)	IGI
GO:0009723 [list] [network] response to ethylene	(297 genes)	IBA IGI
GO:0009651 [list] [network] response to salt stress	(485 genes)	IGI
GO:0045893 [list] [network] positive regulation of transcription, DNA-templated	(495 genes)	IDA
GO:0009737 [list] [network] response to abscisic acid	(574 genes)	IBA IGI
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	TAS
GO:0007275 [list] [network] multicellular organism development	(2714 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IBA IDA ISM TAS

GO MF

GO:1990841 [list] [network] promoter-specific chromatin binding	(4 genes)	IDA IPI
GO:0003712 [list] [network] transcription coregulator activity	(111 genes)	IEA
GO:0043565 [list] [network] sequence-specific DNA binding	(796 genes)	IBA
GO:0044212 [list] [network] transcription regulatory region DNA binding	(871 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	IBA IDA ISS TAS
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

ath04075 [list] [network] Plant hormone signal transduction (273 genes)

Protein

NP_178266.1

BLAST

NP_178266.1

Orthologous

[Ortholog page] GAI (sly) GAI1 (gma) GAI2 (gma) RGL2 (ath) GAI (ath) RGL1 (ath) LOC4333860 (osa) LOC7475521 (ppo) LOC7482891 (ppo) LOC7493546 (ppo) LOC25489240 (mtr) LOC100127531 (zma) LOC100191728 (zma) LOC100232937 (vvi) LOC100253268 (vvi) LOC100797336 (gma) LOC100799695 (gma) LOC103827572 (bra) LOC103839478 (bra) LOC103852324 (bra) LOC103855161 (bra)

Subcellular
localization
wolf

nucl 5, chlo 3, cysk_nucl 3

(predict for NP_178266.1)

Subcellular
localization
TargetP

mito 5, other 3

(predict for NP_178266.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	4

Genes directly connected with RGA1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.3	COI1	RNI-like superfamily protein	[detail]	818581
6.2	AT4G22190	serine/arginine repetitive matrix-like protein	[detail]	828310
6.1	SLP2	subtilisin-like serine protease 2	[detail]	829650
5.8	GAI	GRAS family transcription factor family protein	[detail]	838057

Coexpressed
gene list

[Coexpressed gene list for RGA1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

266331_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

266331_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

266331_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	814686
Refseq ID (protein)	NP_178266.1

The preparation time of this page was 0.2 [sec].