[←][→] ath   At2g17870 Gene
functional annotation
Function   cold shock domain protein 3    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0032508 [list] [network] DNA duplex unwinding  (16 genes)  IDA  
GO:0009631 [list] [network] cold acclimation  (59 genes)  IMP  
GO:0009826 [list] [network] unidimensional cell growth  (356 genes)  IMP  
GO:0009409 [list] [network] response to cold  (472 genes)  IEP IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4228 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (429 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_565427.1 
BLAST NP_565427.1 
Orthologous [Ortholog page] LOC103845908 (bra) 
Subcellular
localization
wolf
nucl 7,  cyto 1,  mito 1,  plas 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_565427.1)
Subcellular
localization
TargetP
other 8  (predict for NP_565427.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03015 mRNA surveillance pathway 4
Genes directly connected with CSP3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
14.5 TAF15b TBP-associated factor 15B [detail] 835960
10.9 CSDP1 cold shock domain protein 1 [detail] 829758
10.3 AT2G33410 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 817905
9.8 AT5G02530 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 831923
9.5 GR-RBP5 glycine-rich RNA-binding protein 5 [detail] 843763
9.5 AT3G18790 pre-mRNA-splicing factor ISY1-like protein [detail] 821412
9.4 AtRZ-1c RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 830307
9.3 AT1G55460 DNA/RNA-binding protein Kin17, conserved region [detail] 841993
8.4 GRP2B glycine-rich protein 2B [detail] 816641
7.1 FIP2 FRIGIDA interacting protein 2 [detail] 827414
6.5 AT5G58020 RTF2 RING-finger protein [detail] 835914
6.5 AT3G05220 Heavy metal transport/detoxification superfamily protein [detail] 819686
6.5 AT3G12130 KH domain-containing protein / zinc finger (CCCH type) family protein [detail] 820388
5.5 AT5G15820 RING/U-box superfamily protein [detail] 831439
4.7 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 827519
Coexpressed
gene list		 [Coexpressed gene list for CSP3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
264789_at
264789_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
264789_at
264789_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
264789_at
264789_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 816297      
Refseq ID (protein) NP_565427.1 


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