ATTED-II : GeneID search result

[←][→] ath AT2G23980 Gene

functional annotation

Function

cyclic nucleotide-gated channel 6

GO BP

GO:0046686 [list] [network] response to cadmium ion

(346 genes)

IEP

GO CC

GO:0005886 [list] [network] plasma membrane	(3771 genes)	IDA
GO:0071944 [list] [network] cell periphery	(4313 genes)	IDA
GO:0016021 [list] [network] integral component of membrane	(4803 genes)	IEA
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

GO:0005223 [list] [network] intracellular cGMP-activated cation channel activity	(2 genes)	IDA
GO:0030552 [list] [network] cAMP binding	(20 genes)	IEA
GO:0030553 [list] [network] cGMP binding	(20 genes)	IEA
GO:0005249 [list] [network] voltage-gated potassium channel activity	(22 genes)	IEA
GO:0005516 [list] [network] calmodulin binding	(182 genes)	IEA IPI TAS

KEGG

ath04626 [list] [network] Plant-pathogen interaction (170 genes)

Protein

NP_001318278.1 NP_001323879.1 NP_001323880.1 NP_001323881.1 NP_001323882.1 NP_001323883.1 NP_001323884.1 NP_001323885.1 NP_001323886.1 NP_565560.1

BLAST

NP_001318278.1 NP_001323879.1 NP_001323880.1 NP_001323881.1 NP_001323882.1 NP_001323883.1 NP_001323884.1 NP_001323885.1 NP_001323886.1 NP_565560.1

Orthologous

[Ortholog page] CNGC9 (ath) CNGC5 (ath) CNGC7 (ath) CNGC8 (ath) LOC4333569 (osa) LOC4337181 (osa) LOC7493233 (ppo) LOC11437572 (mtr) LOC100241716 (vvi) LOC100246671 (vvi) LOC100281197 (zma) LOC100784309 (gma) LOC100784327 (gma) LOC100815308 (gma) LOC100820202 (gma) LOC101248001 (sly) LOC101267093 (sly) LOC101267716 (sly) LOC103626042 (zma) LOC103842393 (bra) LOC103851674 (bra) LOC103861975 (bra) LOC103864509 (bra) LOC103872400 (bra) LOC112421063 (mtr)

Subcellular
localization
wolf

plas 9, nucl 1, vacu 1	(predict for NP_001318278.1)
plas 9, nucl 1, vacu 1	(predict for NP_001323879.1)
plas 7, vacu 1, nucl 1, E.R. 1	(predict for NP_001323880.1)
plas 9, nucl 1, vacu 1	(predict for NP_001323881.1)
plas 9, nucl 1, vacu 1	(predict for NP_001323882.1)
plas 9, nucl 1, vacu 1	(predict for NP_001323883.1)
plas 9, nucl 1, vacu 1	(predict for NP_001323884.1)
plas 9, nucl 1, vacu 1	(predict for NP_001323885.1)
plas 9, nucl 1, vacu 1	(predict for NP_001323886.1)
plas 9, nucl 1, vacu 1	(predict for NP_565560.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001318278.1)
other 7	(predict for NP_001323879.1)
other 5, chlo 5	(predict for NP_001323880.1)
other 7	(predict for NP_001323881.1)
other 7	(predict for NP_001323882.1)
other 7	(predict for NP_001323883.1)
other 7	(predict for NP_001323884.1)
other 7	(predict for NP_001323885.1)
other 7	(predict for NP_001323886.1)
other 7	(predict for NP_565560.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2

Genes directly connected with CNGC6 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.7	VAD1	GRAM domain family protein	[detail]	839232
5.5	VPS35B	VPS35 homolog B	[detail]	843918
5.4	AT5G44090	Calcium-binding EF-hand family protein	[detail]	834432
5.1	AT4G40050	signal transducer, putative (DUF3550/UPF0682)	[detail]	830168

Coexpressed
gene list

[Coexpressed gene list for CNGC6]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

266520_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

266520_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

266520_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	816931
Refseq ID (protein)	NP_001318278.1
	NP_001323879.1
	NP_001323880.1
	NP_001323881.1
	NP_001323882.1
	NP_001323883.1
	NP_001323884.1
	NP_001323885.1
	NP_001323886.1
	NP_565560.1

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