[←][→] ath   AT2G29580 Gene
functional annotation
Function   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein  
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IEA  
GO CC
GO:0071006 [list] [network] U2-type catalytic step 1 spliceosome  (2 genes)  IBA  
GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome  (8 genes)  IBA  
GO:0000974 [list] [network] Prp19 complex  (11 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0017070 [list] [network] U6 snRNA binding  (7 genes)  IBA  
GO:0036002 [list] [network] pre-mRNA binding  (19 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_180518.1 
BLAST NP_180518.1 
Orthologous [Ortholog page] MAC5C (ath)  MAC5A (ath)  LOC4340263 (osa)  LOC4342926 (osa)  LOC7468585 (ppo)  LOC11439454 (mtr)  LOC100241603 (vvi)  LOC100285059 (zma)  LOC100778975 (gma)  LOC100779917 (gma)  LOC100789382 (gma)  LOC100810440 (gma)  LOC101253177 (sly)  LOC101262575 (sly)  LOC103836448 (bra)  LOC103847263 (bra)  LOC103864977 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_180518.1)
Subcellular
localization
TargetP
other 8  (predict for NP_180518.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 RNA transport 2
Genes directly connected with MAC5B on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.5 MAC5A CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [detail] 837248
6.2 AT2G28240 ATP-dependent helicase family protein [detail] 817370
5.9 AT4G31200 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [detail] 829247
Coexpressed
gene list		 [Coexpressed gene list for MAC5B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266240_at
266240_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266240_at
266240_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266240_at
266240_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817507      
Refseq ID (protein) NP_180518.1 


The preparation time of this page was 0.2 [sec].