[][] ath   AT2G30950 Gene
functional annotation
Function   FtsH extracellular protease family
GO BP
GO:0010304 [list] [network] PSII associated light-harvesting complex II catabolic process  (8 genes)  IBA TAS  
GO:0010205 [list] [network] photoinhibition  (13 genes)  IBA IMP  
GO:0010206 [list] [network] photosystem II repair  (14 genes)  IBA IMP  
GO:0048564 [list] [network] photosystem I assembly  (16 genes)  IMP  
GO:0010027 [list] [network] thylakoid membrane organization  (49 genes)  IBA IMP  
GO:0072593 [list] [network] reactive oxygen species metabolic process  (133 genes)  IDA  
GO:0009658 [list] [network] chloroplast organization  (194 genes)  IGI  
GO:0030163 [list] [network] protein catabolic process  (603 genes)  IDA  
GO:0006508 [list] [network] proteolysis  (901 genes)  IBA  
GO:0007275 [list] [network] multicellular organism development  (2714 genes)  IEA  
GO CC
GO:0031977 [list] [network] thylakoid lumen  (72 genes)  IDA  
GO:0005777 [list] [network] peroxisome  (325 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (373 genes)  IBA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (474 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (543 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IBA IDA  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO MF
GO:0004176 [list] [network] ATP-dependent peptidase activity  (30 genes)  IBA ISS  
GO:0004222 [list] [network] metalloendopeptidase activity  (48 genes)  IEA  
GO:0008237 [list] [network] metallopeptidase activity  (69 genes)  ISS  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_001323509.1  NP_001323510.1  NP_001323511.1  NP_850156.1 
BLAST NP_001323509.1  NP_001323510.1  NP_001323511.1  NP_850156.1 
Orthologous [Ortholog page] FTSH8 (ath)LOC4341796 (osa)LOC7457995 (ppo)LOC7489894 (ppo)LOC25488224 (mtr)LOC25493413 (mtr)LOC100147734 (zma)LOC100147735 (zma)LOC100250511 (vvi)FTSH9 (gma)LOC100798355 (gma)LOC100800550 (gma)LOC100816354 (gma)LOC101266739 (sly)LOC103836478 (bra)LOC103844041 (bra)LOC103867923 (bra)
Subcellular
localization
wolf
chlo 9  (predict for NP_001323509.1)
chlo 9  (predict for NP_001323510.1)
chlo 9  (predict for NP_001323511.1)
chlo 9  (predict for NP_850156.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001323509.1)
chlo 9  (predict for NP_001323510.1)
chlo 9  (predict for NP_001323511.1)
chlo 9  (predict for NP_850156.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 3
Genes directly connected with VAR2 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
12.3 VAR1 FtsH extracellular protease family [detail] 834232
12.1 FTSH1 FTSH protease 1 [detail] 841447
9.9 CLPC1 CLPC homologue 1 [detail] 835165
9.4 HDS 4-hydroxy-3-methylbut-2-enyl diphosphate synthase [detail] 836181
8.9 PREP1 presequence protease 1 [detail] 821451
8.7 ACD1-LIKE ACD1-like protein [detail] 828670
8.5 AT5G05200 Protein kinase superfamily protein [detail] 830402
8.2 AT1G79600 Protein kinase superfamily protein [detail] 844298
5.9 MGT10 magnesium (Mg) transporter 10 [detail] 832346
Coexpressed
gene list
[Coexpressed gene list for VAR2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267196_at
267196_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267196_at
267196_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
267196_at
267196_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 817646    
Refseq ID (protein) NP_001323509.1 
NP_001323510.1 
NP_001323511.1 
NP_850156.1 


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